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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_27845 and AO356_27850 overlap by 4 nucleotides
AO356_27850 and AO356_27855 overlap by 4 nucleotides
AO356_27855 and AO356_27860 are separated by 818 nucleotides
AO356_27860 and AO356_27865 are separated by 24 nucleotides
AO356_27845: AO356_27845 - hydrolase, at 6,355,205 to 6,356,026
_27845
AO356_27850: AO356_27850 - glucose-6-phosphate dehydrogenase, at 6,356,023 to 6,357,543
_27850
AO356_27855: AO356_27855 - 6-phosphogluconate dehydrogenase, at 6,357,540 to 6,358,520
_27855
AO356_27860: AO356_27860 - hypothetical protein, at 6,359,339 to 6,361,078
_27860
AO356_27865: AO356_27865 - GNAT family acetyltransferase, at 6,361,103 to 6,361,597
_27865
Group
Condition
AO356
_27845
AO356
_27850
AO356
_27855
AO356
_27860
AO356
_27865
carbon source
D-Fructose (C)
-1.1
-0.1
+0.1
-0.1
N.D.
nitrogen source
Gly-Glu (N)
-0.7
-0.1
-0.0
-0.1
N.D.
stress
Chlorite 0.04 mM
-0.6
-0.0
-0.1
-0.2
N.D.
stress
Choline chloride 300 mM
-0.5
-0.1
-0.2
-0.1
N.D.
carbon source
L-Asparagine (C)
-0.6
-0.2
-0.1
+0.0
N.D.
carbon source
D-Fructose (C)
-0.8
-0.1
+0.1
-0.1
N.D.
stress
Aluminum chloride 5 mM
+0.0
-0.1
+0.0
-0.8
N.D.
motility
outer cut, LB soft agar motility assay
-0.3
+0.1
-0.1
-0.3
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
-0.2
-0.4
+0.2
N.D.
carbon source
L-Lysine (C)
+0.3
+0.0
-0.2
-0.3
N.D.
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.1
+0.4
-0.2
N.D.
stress
Nickel (II) chloride 0.625 mM
+0.4
-0.0
+0.1
-0.3
N.D.
motility
outer cut, LB soft agar motility assay
+0.5
+0.3
-0.1
-0.1
N.D.
survival
4C survival; 360 hrs
+0.4
-0.1
+0.1
+0.2
N.D.
stress
Sisomicin 0.001 mg/ml
+0.6
-0.1
+0.2
+0.1
N.D.
carbon source
D-Lactate (C)
+0.3
+0.2
+0.2
+0.2
N.D.
carbon source
NAG (C)
+0.0
+0.2
+0.4
+0.2
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+0.5
+0.1
-0.1
N.D.
carbon source
Carbon source D-Mannitol 10 mM
+0.3
-0.0
+0.3
+0.3
N.D.
carbon source
Carbon source Sucrose 2.5 mM
+0.5
+0.0
+0.1
+0.1
N.D.
carbon source
Carbon source Sucrose 5 mM
+0.5
+0.1
+0.1
+0.1
N.D.
carbon source
Carbon source D-Glucose 10 mM
+0.3
+0.0
+0.2
+0.3
N.D.
stress
Lomefloxacin 0.0005 mM
+0.5
+0.1
+0.1
+0.2
N.D.
carbon source
Carbon source D-Mannitol 5 mM
+0.3
+0.1
+0.2
+0.2
N.D.
pH
Minimal media pH8
+0.4
+0.1
+0.2
+0.2
N.D.
carbon source
Carbon source D-Mannitol 5 mM
+0.6
+0.1
+0.1
+0.1
N.D.
carbon source
D-Galactose (C)
+0.6
+0.2
+0.2
-0.0
N.D.
carbon source
Carbon source Sucrose 10 mM
+0.6
-0.0
+0.2
+0.2
N.D.
carbon source
Carbon source D-Mannitol 10 mM
+0.7
-0.0
+0.2
+0.1
N.D.
stress
KB-half, Pseudo5 supernatant
+0.4
+0.3
+0.3
+0.1
N.D.
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