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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27520 and AO356_27525 are separated by 106 nucleotides
AO356_27525 and AO356_27530 are separated by 200 nucleotides
AO356_27530 and AO356_27535 are separated by 122 nucleotides
AO356_27535 and AO356_27540 are separated by 1 nucleotides
AO356_27520: AO356_27520 - betaine-aldehyde dehydrogenase, at 6,272,395 to 6,273,849
_27520
AO356_27525: AO356_27525 - cytochrome B, at 6,273,956 to 6,274,519
_27525
AO356_27530: AO356_27530 - hypothetical protein, at 6,274,720 to 6,278,454
_27530
AO356_27535: AO356_27535 - channel protein TolC, at 6,278,577 to 6,279,884
_27535
AO356_27540: AO356_27540 - hemolysin secretion protein D, at 6,279,886 to 6,281,208
_27540
Group
Condition
AO356
_27520
AO356
_27525
AO356
_27530
AO356
_27535
AO356
_27540
stress
KB-half, Pseudo5 supernatant
-0.3
-0.4
-0.2
-0.5
-0.4
stress
Choline chloride 500 mM
-0.3
-0.1
-0.1
-0.6
-0.4
nitrogen source
nitrite (N)
-0.6
-0.5
+0.1
-0.1
-0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.4
+0.1
-0.2
-0.0
-0.8
nitrogen source
Urea (N)
+0.0
-0.2
-0.1
-0.2
-0.8
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.0
-0.6
-0.4
-0.5
+0.2
carbon source
L-Histidine (C)
-0.4
-0.0
+0.0
-0.8
-0.1
stress
Paraquat dichloride 0.0625 mg/ml
-0.4
+0.4
-0.1
-0.4
-0.8
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.2
-0.3
-0.6
-0.5
stress
Lomefloxacin 0.0005 mM
-0.3
+0.1
-0.2
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
+0.3
-0.2
-0.9
survival
4C survival; 672 hrs
-0.3
-0.2
-0.0
+0.3
-0.7
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.6
-0.0
+0.0
-0.7
+0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.5
-0.1
+0.2
+0.4
-0.7
nitrogen source
D-Serine (N)
-0.1
+0.0
-0.0
-0.8
+0.5
stress
Nickel (II) chloride 0.625 mM
-0.5
+0.4
+0.1
-0.0
-0.4
stress
copper (II) chloride 2.5 mM
+0.1
+0.2
+0.3
-0.7
-0.2
carbon source
L-Isoleucine (C)
-0.3
+0.0
+0.1
-0.4
+0.5
carbon source
D-Gluconic Acid (C)
+0.0
+0.6
+0.2
-0.3
-0.4
carbon source
D-Xylose (C)
-0.5
+0.3
+0.2
-0.2
+0.3
stress
Sisomicin 0.001 mg/ml
+0.2
+0.3
+0.4
-0.1
-0.6
carbon source
Carbon source Sucrose 5 mM
+0.3
-0.5
-0.1
+0.2
+0.2
resistance
20 mM putrescine
-0.0
-0.4
+0.1
+0.2
+0.5
carbon source
L-Arabinose (C)
-0.2
+0.4
+0.1
+0.4
-0.3
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
-0.4
+0.1
+0.1
+0.6
carbon source
pyruvate (C)
-0.3
+0.4
+0.2
+0.0
+0.2
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.1
-0.3
+0.2
+0.4
+0.4
carbon source
Carbon source Sucrose 10 mM
+0.4
-0.4
+0.0
+0.0
+0.8
nitrogen source
L-tyrosine (N)
+0.5
-0.1
-0.0
+0.2
+0.5
stress
nitrate 200 mM
+0.4
+0.4
+0.2
+0.5
+0.5
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