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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27480 and AO356_27485 are separated by 45 nucleotides
AO356_27485 and AO356_27490 are separated by 173 nucleotides
AO356_27490 and AO356_27495 are separated by 266 nucleotides
AO356_27495 and AO356_27500 are separated by 222 nucleotides
AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242
_27480
AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094
_27485
AO356_27490: AO356_27490 - xylose isomerase, at 6,265,268 to 6,266,077
_27490
AO356_27495: AO356_27495 - short-chain dehydrogenase, at 6,266,344 to 6,267,135
_27495
AO356_27500: AO356_27500 - amino acid permease, at 6,267,358 to 6,268,806
_27500
Group
Condition
AO356
_27480
AO356
_27485
AO356
_27490
AO356
_27495
AO356
_27500
anaerobic
Nitrate reduction with yeast extract
+0.0
-1.5
+0.2
-0.8
-0.3
survival
4C survival; 360 hrs
-0.0
-1.5
-0.1
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.0
+0.1
-1.6
-0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.7
-0.7
-0.0
-0.4
stress
KB-half, Pseudo5 supernatant
-0.3
-0.6
-0.4
-0.1
-0.1
survival
4C survival; 192 hrs
-0.2
-0.3
-0.2
-0.4
-0.3
carbon source
Carbon source D-Mannitol 10 mM
+0.0
-0.6
+0.1
-0.7
+0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
-0.5
-0.2
-0.1
-0.1
stress
Cholin acetate 40 mM
-0.1
-0.3
+0.2
-0.9
-0.0
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
+0.0
-1.3
+0.2
carbon source
L-Lysine (C)
+0.3
-0.6
-0.1
-0.9
+0.1
survival
4C survival; 1152 hrs
-0.3
-0.8
-0.0
-0.1
+0.1
stress
Aluminum chloride 5 mM
-0.2
-0.9
-0.0
+0.1
-0.1
carbon source
L-Malic (C)
-0.1
-0.6
+0.1
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-1.0
+0.1
+0.0
-0.3
nitrogen source
D-Alanine (N)
-0.1
-0.7
+0.1
-0.3
+0.1
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.6
+0.2
-0.2
-0.1
stress
copper (II) chloride 2.5 mM
-0.2
+0.5
+0.0
-0.7
-0.2
carbon source
L-Isoleucine (C)
+0.3
-0.8
+0.0
+0.2
-0.1
carbon source
L-Lysine (C)
-0.0
+0.3
+0.2
-0.6
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
+0.2
-0.5
-0.2
stress
Sisomicin 0.001 mg/ml
-0.2
+0.1
-0.4
+0.9
-0.4
carbon source
m-Inositol (C)
-0.2
+0.5
+0.1
-0.4
-0.0
stress
nitrite 10 mM
-0.2
+0.7
-0.1
+0.0
-0.3
stress
Lomefloxacin 0.0005 mM
-0.7
+1.0
+0.1
-0.1
-0.1
stress
Cholin acetate 20 mM
-0.2
+0.6
+0.0
+0.0
+0.2
carbon source
D-Xylose (C)
+0.0
+0.4
-0.0
+0.6
+0.0
carbon source
Fumarate (C)
+0.3
+1.0
+0.0
+0.2
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
+1.0
+0.5
+0.2
+0.0
carbon source
Fumarate (C)
+0.4
+1.1
+0.3
+0.4
+0.2
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