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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27430 and AO356_27435 are separated by 22 nucleotides
AO356_27435 and AO356_27440 are separated by 3 nucleotides
AO356_27440 and AO356_27445 overlap by 4 nucleotides
AO356_27445 and AO356_27450 are separated by 288 nucleotides
AO356_27430: AO356_27430 - hypothetical protein, at 6,251,109 to 6,251,804
_27430
AO356_27435: AO356_27435 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 6,251,827 to 6,252,720
_27435
AO356_27440: AO356_27440 - 2-keto-4-pentenoate hydratase, at 6,252,724 to 6,253,524
_27440
AO356_27445: AO356_27445 - IclR family transcriptional regulator, at 6,253,521 to 6,254,327
_27445
AO356_27450: AO356_27450 - fumarylacetoacetate hydrolase, at 6,254,616 to 6,255,794
_27450
Group
Condition
AO356
_27430
AO356
_27435
AO356
_27440
AO356
_27445
AO356
_27450
carbon source
L-Histidine (C)
-0.3
+0.1
-0.1
-2.1
-0.2
carbon source
D-Xylose (C)
+0.0
-0.2
-0.0
-1.4
-0.4
carbon source
L-Histidine (C)
-0.0
+0.2
-0.0
-1.7
-0.1
carbon source
NAG (C)
-0.1
+0.2
+0.1
-1.1
-0.5
stress
KB-half, Pseudo5 supernatant
-0.3
-0.2
-0.5
-0.0
-0.3
carbon source
L-Lysine (C)
+0.4
-0.2
+0.0
-1.3
-0.2
carbon source
L-Proline (C)
-0.1
-0.4
+0.0
-0.8
+0.1
carbon source
D-Fructose (C)
+0.0
-0.5
+0.1
-0.9
+0.0
anaerobic
Nitrate reduction with yeast extract
-0.3
-0.8
+0.0
-0.1
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
-0.0
-0.4
-0.2
-0.2
survival
4C survival; 672 hrs
-0.3
-0.5
+0.1
-0.0
-0.4
survival
4C survival; 1152 hrs
-0.3
-0.5
+0.1
-0.2
-0.2
carbon source
L-Lysine (C)
+0.0
-0.3
+0.2
-0.9
-0.0
pH
Minimal media pH9
-0.1
-0.1
+0.1
-0.6
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
-0.5
-0.5
+0.1
-0.1
-0.0
nitrogen source
Gly-Glu (N)
-0.2
-0.3
+0.1
-0.1
-0.4
carbon source
D-Xylose (C)
+0.1
-0.1
+0.1
-1.0
+0.1
carbon source
L-Proline (C)
+0.2
-0.3
+0.0
-0.7
+0.0
carbon source
D-Fructose (C)
-0.1
-0.1
+0.2
-0.8
-0.0
carbon source
D-Lactate (C)
-0.1
-0.1
+0.1
-0.8
+0.2
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
-0.4
-0.6
-0.2
carbon source
Putrescine (C)
-0.4
+0.1
+0.0
+0.6
-0.4
stress
Cisplatin 0.0032 mg/ml
+0.4
-0.4
+0.1
+0.2
-0.1
stress
Vanillin 1.25 mM
+0.2
+0.4
+0.2
-0.4
-0.1
carbon source
L-Leucine (C)
-0.1
-0.0
+0.1
+0.8
-0.3
stress
Lomefloxacin 0.0005 mM
+0.5
+0.2
-0.0
-0.4
+0.4
motility
outer cut, LB soft agar motility assay
+0.0
+0.4
+0.7
-0.3
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.6
+0.4
-0.3
+0.3
carbon source
Fumarate (C)
+0.1
-0.0
+0.2
+0.7
+0.3
stress
Nickel (II) chloride 0.625 mM
+0.5
+0.2
+0.1
+0.0
+0.5
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