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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_27270 and AO356_27275 are separated by 144 nucleotides
AO356_27275 and AO356_27280 overlap by 4 nucleotides
AO356_27280 and AO356_27285 are separated by 147 nucleotides
AO356_27285 and AO356_27290 overlap by 1 nucleotides
AO356_27270: AO356_27270 - MFS transporter, at 6,215,847 to 6,217,265
_27270
AO356_27275: AO356_27275 - histidine kinase, at 6,217,410 to 6,218,834
_27275
AO356_27280: AO356_27280 - XRE family transcriptional regulator, at 6,218,831 to 6,219,493
_27280
AO356_27285: AO356_27285 - hypothetical protein, at 6,219,641 to 6,219,907
_27285
AO356_27290: AO356_27290 - cytochrome B, at 6,219,907 to 6,220,452
_27290
Group
Condition
AO356
_27270
AO356
_27275
AO356
_27280
AO356
_27285
AO356
_27290
motility
outer cut, LB soft agar motility assay
+0.2
-0.0
-2.8
-0.1
-1.1
lb
LB
-0.0
-0.0
-1.5
-0.2
-0.3
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.0
+0.2
-1.9
-0.6
+0.3
stress
Choline chloride 500 mM
-0.1
+0.2
-2.2
+0.0
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.1
-0.8
+0.1
-1.3
carbon source
L-Isoleucine (C)
-0.1
-0.0
-1.7
+0.1
+0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
+0.0
-0.9
-0.5
-0.2
pH
Minimal media pH9
+0.0
-0.3
-1.1
+0.3
-0.4
carbon source
D-Ribose (C)
-0.2
-0.0
-1.2
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
-1.6
-0.0
+0.1
survival
4C survival; 360 hrs
+0.2
-0.4
-0.3
-1.0
+0.1
stress
Chloramphenicol 0.005 mg/ml
+0.3
-0.0
-1.3
+0.0
-0.0
temperature
LB 30C
+0.2
+0.0
-1.4
-0.0
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
+0.2
-1.2
+0.0
+0.3
carbon source
Carbon source Sucrose 10 mM
-0.0
+0.1
-0.4
-0.9
+0.3
stress
Chlorite 0.04 mM
-0.2
+0.1
-0.6
-0.5
+0.5
stress
Cobalt chloride 0.08 mM
+0.3
+0.1
-0.5
-0.6
+0.2
stress
perchlorate 75 mM
-0.3
+0.0
-0.6
+0.5
+0.1
stress
Cisplatin 0.0032 mg/ml
+0.0
+0.2
+0.7
-1.1
-0.1
carbon source
L-Alanine (C)
-0.0
+0.3
+0.2
-0.8
+0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
+0.3
-0.9
+0.5
carbon source
L-Arabinose (C)
+0.2
+0.3
-0.2
-0.4
+0.5
carbon source
D-Lactate (C)
-0.2
+0.2
+0.6
-0.5
+0.4
stress
Cisplatin 0.0032 mg/ml
+0.0
+0.4
+0.4
-0.4
+0.3
stress
acetate 40 mM
+0.1
+0.4
+0.7
-0.3
+0.5
nitrogen source
Urea (N)
+0.1
-0.4
+2.6
-0.4
-0.4
carbon source
D-Sorbitol (C)
-0.0
+0.3
+1.0
+0.4
+0.1
carbon source
L-Asparagine (C)
+0.1
+0.2
+0.8
+0.6
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
+0.2
+0.3
+0.2
+0.5
+0.5
stress
Sisomicin 0.001 mg/ml
-0.4
+0.3
+2.0
-0.2
+0.3
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