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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_27260 and AO356_27265 overlap by 4 nucleotides
AO356_27265 and AO356_27270 are separated by 95 nucleotides
AO356_27270 and AO356_27275 are separated by 144 nucleotides
AO356_27275 and AO356_27280 overlap by 4 nucleotides
AO356_27260: AO356_27260 - myo-inositol 2-dehydrogenase, at 6,213,767 to 6,214,795
_27260
AO356_27265: AO356_27265 - hypothetical protein, at 6,214,792 to 6,215,751
_27265
AO356_27270: AO356_27270 - MFS transporter, at 6,215,847 to 6,217,265
_27270
AO356_27275: AO356_27275 - histidine kinase, at 6,217,410 to 6,218,834
_27275
AO356_27280: AO356_27280 - XRE family transcriptional regulator, at 6,218,831 to 6,219,493
_27280
Group
Condition
AO356
_27260
AO356
_27265
AO356
_27270
AO356
_27275
AO356
_27280
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
+0.2
-0.0
-2.8
stress
Choline chloride 500 mM
-0.1
-0.2
-0.1
+0.2
-2.2
motility
outer cut, LB soft agar motility assay
+0.0
-0.8
+0.1
+0.1
-1.6
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.4
+0.0
+0.2
-1.9
lb
LB
-0.1
-0.3
-0.0
-0.0
-1.5
carbon source
L-Isoleucine (C)
-0.1
+0.1
-0.1
-0.0
-1.7
temperature
LB 30C
-0.2
-0.1
+0.2
+0.0
-1.4
stress
Chloramphenicol 0.005 mg/ml
-0.1
-0.1
+0.3
-0.0
-1.3
carbon source
D-Ribose (C)
+0.2
+0.0
-0.2
-0.0
-1.2
stress
Spectinomycin 0.025 mg/ml
-0.1
+0.1
-0.3
+0.1
-1.0
pH
Minimal media pH9
+0.0
+0.2
+0.0
-0.3
-1.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
+0.0
+0.1
-0.3
-0.7
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
+0.3
-0.2
+0.2
-1.2
stress
D-Cycloserine 0.1 mg/ml
-0.1
+0.1
+0.3
-0.1
-0.9
stress
copper (II) chloride 2.5 mM
+0.3
+0.1
+0.2
-0.0
-1.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
+0.5
-0.1
+0.0
-0.9
stress
Cephalothin 2 mg/ml
+0.1
+0.3
-0.2
+0.3
-0.7
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
+0.4
-0.1
-0.3
-0.4
stress
Cobalt chloride 0.08 mM
+0.1
+0.4
+0.3
+0.1
-0.5
stress
syringaldehyde 10 mM
-0.1
-0.2
-0.1
-0.1
+1.0
pH
Minimal media pH8
+0.4
+0.2
+0.3
-0.5
+0.1
survival
4C survival; 1152 hrs
-0.1
+0.5
+0.1
-0.4
+0.5
motility
outer cut, LB soft agar motility assay
+0.4
-0.1
-0.2
+0.3
+0.3
carbon source
L-Asparagine (C)
-0.1
-0.2
+0.1
+0.2
+0.8
stress
Cisplatin 0.0032 mg/ml
+0.2
-0.3
+0.0
+0.4
+0.4
carbon source
D-Sorbitol (C)
-0.2
-0.0
-0.0
+0.3
+1.0
carbon source
D-Galactose (C)
+0.2
+0.7
+0.1
+0.2
+0.3
stress
acetate 40 mM
+0.1
+0.2
+0.1
+0.4
+0.7
stress
Sisomicin 0.001 mg/ml
+0.2
-0.0
-0.4
+0.3
+2.0
nitrogen source
Urea (N)
+0.2
-0.1
+0.1
-0.4
+2.6
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