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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_26890 and AO356_26895 are separated by 183 nucleotides
AO356_26895 and AO356_26900 are separated by 12 nucleotides
AO356_26900 and AO356_26905 are separated by 46 nucleotides
AO356_26905 and AO356_26910 are separated by 39 nucleotides
AO356_26890: AO356_26890 - MFS transporter, at 6,122,315 to 6,123,523
_26890
AO356_26895: AO356_26895 - 2Fe-2S ferredoxin, at 6,123,707 to 6,124,180
_26895
AO356_26900: AO356_26900 - carbon monoxide dehydrogenase, at 6,124,193 to 6,126,436
_26900
AO356_26905: AO356_26905 - AraC family transcriptional regulator, at 6,126,483 to 6,127,391
_26905
AO356_26910: AO356_26910 - hypothetical protein, at 6,127,431 to 6,127,637
_26910
Group
Condition
AO356
_26890
AO356
_26895
AO356
_26900
AO356
_26905
AO356
_26910
stress
Sisomicin 0.001 mg/ml
-0.8
-1.0
+0.1
-0.3
-0.4
stress
nitrate 200 mM
-0.4
-0.9
-0.0
-0.5
-0.2
stress
Chlorite 0.08 mM
+0.1
-1.5
+0.1
+0.0
-0.7
carbon source
Fumarate (C)
-0.2
-0.8
-0.2
-0.1
-0.5
stress
Cisplatin 0.0032 mg/ml
-0.3
-0.4
-0.2
-0.3
-0.5
carbon source
L-Arabinose (C)
-0.2
-1.3
-0.0
-0.1
+0.1
stress
Nickel (II) chloride 0.625 mM
-0.2
-0.8
-0.0
+0.1
-0.7
stress
Bacitracin 2 mg/ml
+0.1
-0.8
+0.0
-0.3
-0.6
stress
nitrite 10 mM
+0.1
-1.3
+0.4
+0.1
-0.5
carbon source
D-Glucose (C)
-0.2
-0.9
+0.1
+0.2
-0.4
stress
acetate 40 mM
-0.2
-1.3
+0.2
+0.1
+0.1
carbon source
D-Gluconic Acid (C)
-0.2
-0.8
-0.3
-0.0
+0.5
motility
outer cut, LB soft agar motility assay
-0.3
+0.6
-0.1
-0.2
-0.7
survival
4C survival; 360 hrs
+0.0
-1.1
+0.2
+0.6
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
+0.8
+0.0
-0.0
-1.5
nitrogen source
Inosine (N)
-0.7
+0.6
-0.2
+0.1
+0.2
stress
methylglyoxal 0.016 vol%
-0.1
-0.5
-0.1
+0.2
+0.7
motility
outer cut, LB soft agar motility assay
-0.1
+0.0
-0.4
-0.4
+1.2
carbon source
L-Histidine (C)
-0.1
+1.0
-0.2
+0.4
-0.7
carbon source
Carbon source Sucrose 5 mM
+0.3
+1.2
-0.1
-0.0
-0.7
stress
copper (II) chloride 2.5 mM
+0.5
+0.7
+0.3
-0.1
-0.6
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
+0.2
-0.4
+0.7
carbon source
L-Histidine (C)
+0.0
+1.0
-0.0
+0.4
-0.4
nitrogen source
L-Leucine (N)
-0.3
+0.6
-0.0
+0.2
+0.6
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+1.2
+0.5
-0.4
-0.3
stress
KB-half, Pseudo5 supernatant
+0.6
+0.6
+0.4
-0.4
+0.2
carbon source
L-Malic (C)
-0.1
+1.3
-0.1
+0.3
+0.1
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.4
+0.6
+0.5
+0.2
stress
Vanillin 1.25 mM
+0.3
+0.2
+0.2
+0.1
+1.0
motility
outer cut, LB soft agar motility assay
-0.1
+3.9
-0.0
+0.2
-1.8
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