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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_26280 and AO356_26285 overlap by 1 nucleotides
AO356_26285 and AO356_26290 are separated by 234 nucleotides
AO356_26290 and AO356_26295 are separated by 36 nucleotides
AO356_26295 and AO356_26300 are separated by 709 nucleotides
AO356_26280: AO356_26280 - RNA polymerase subunit sigma, at 5,952,874 to 5,953,383
_26280
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
AO356_26290: AO356_26290 - TonB-dependent receptor, at 5,954,562 to 5,956,985
_26290
AO356_26295: AO356_26295 - ribosomal protein S3AE, at 5,957,022 to 5,957,423
_26295
AO356_26300: AO356_26300 - hypothetical protein, at 5,958,133 to 5,958,612
_26300
Group
Condition
AO356
_26280
AO356
_26285
AO356
_26290
AO356
_26295
AO356
_26300
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.6
-1.5
-0.6
N.D.
-0.2
stress
KB-half, Pseudo5 supernatant
-1.0
-0.8
-0.4
N.D.
-0.7
temperature
LB 30C
-0.4
-1.4
-0.1
N.D.
-0.1
stress
Nickel (II) chloride 0.625 mM
-0.2
-0.9
-0.3
N.D.
-0.1
carbon source
L-Glutamic (C)
-0.4
-0.6
-0.0
N.D.
-0.1
stress
Benzethonium chloride 0.025 mM
+0.0
-1.0
-0.0
N.D.
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
-0.8
-0.0
N.D.
-0.2
stress
Sisomicin 0.001 mg/ml
+0.2
-1.1
+0.1
N.D.
-0.1
carbon source
pyruvate (C)
+0.4
-1.0
-0.1
N.D.
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.3
-0.6
-0.1
N.D.
-0.4
carbon source
Carbon source Sucrose 5 mM
-0.3
-0.6
-0.1
N.D.
+0.2
lb
LB
-0.3
-0.3
+0.2
N.D.
-0.4
stress
Fusidic 0.1 mg/ml
+0.2
-1.0
+0.1
N.D.
-0.1
stress
Benzalkonium Chloride 0.008 mg/ml
+0.2
-1.2
+0.1
N.D.
+0.1
nitrogen source
Adenine (N)
+0.2
-0.7
+0.0
N.D.
-0.3
stress
Vanillin 1.25 mM
+0.4
-0.7
-0.0
N.D.
-0.3
nitrogen source
L-Leucine (N)
+0.2
-1.0
-0.0
N.D.
+0.2
stress
Cobalt chloride 0.08 mM
+0.5
-1.0
-0.1
N.D.
+0.0
stress
Choline chloride 300 mM
+0.6
-0.8
-0.1
N.D.
-0.1
carbon source
Carnitine Hydrochloride (C)
+0.2
-0.9
+0.1
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-1.0
+0.0
N.D.
+0.3
carbon source
L-Malic (C)
+0.2
-0.6
-0.1
N.D.
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.4
+0.6
+0.1
N.D.
-0.4
stress
Cephalothin 2 mg/ml
+0.5
-0.6
-0.1
N.D.
+0.1
stress
Rifampicin 0.0024 mg/ml
+0.5
-0.5
+0.2
N.D.
-0.0
stress
copper (II) chloride 2.5 mM
-0.2
+1.3
-0.4
N.D.
+0.1
carbon source
Putrescine (C)
-0.1
+0.6
-0.2
N.D.
+0.7
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.5
+0.0
N.D.
+0.5
stress
Paraquat dichloride 0.0625 mg/ml
+0.2
+1.5
-0.2
N.D.
-0.2
stress
Cisplatin 0.0032 mg/ml
+0.5
+1.4
-0.2
N.D.
-0.4
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