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Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_26240 and AO356_26245 overlap by 4 nucleotides
AO356_26245 and AO356_26250 are separated by 150 nucleotides
AO356_26250 and AO356_26255 are separated by 32 nucleotides
AO356_26255 and AO356_26260 overlap by 4 nucleotides
AO356_26240: AO356_26240 - protein TolR, at 5,944,974 to 5,945,420
_26240
AO356_26245: AO356_26245 - energy transducer TonB, at 5,945,417 to 5,946,238
_26245
AO356_26250: AO356_26250 - AraC family transcriptional regulator, at 5,946,389 to 5,947,282
_26250
AO356_26255: AO356_26255 - chemotaxis protein CheY, at 5,947,315 to 5,947,782
_26255
AO356_26260: AO356_26260 - histidine kinase, at 5,947,779 to 5,950,091
_26260
Group
Condition
AO356
_26240
AO356
_26245
AO356
_26250
AO356
_26255
AO356
_26260
motility
outer cut, LB soft agar motility assay
-0.7
-1.1
+0.0
+0.3
-0.4
carbon source
Putrescine (C)
+0.1
-1.3
-0.3
-0.0
+0.0
carbon source
L-Leucine (C)
+0.2
-1.2
-0.4
-0.1
+0.0
carbon source
L-Isoleucine (C)
+0.1
-0.8
-0.3
-0.3
-0.0
stress
methylglyoxal 0.016 vol%
-0.2
-0.7
+0.2
-0.5
-0.0
anaerobic
Nitrate reduction with yeast extract
-0.3
+0.2
-0.9
-0.2
+0.0
carbon source
L-Asparagine (C)
-0.1
-0.4
-0.2
+0.2
-0.6
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.4
-0.3
+0.6
-0.5
-0.5
carbon source
Inosine (C)
-0.0
-0.8
-0.7
+0.3
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
-0.9
+0.4
-0.4
+0.2
stress
Bacitracin 2 mg/ml
-0.5
-0.5
+0.3
-0.3
+0.2
nitrogen source
D-Serine (N)
-0.2
-0.6
-0.5
+0.3
+0.1
stress
syringaldehyde 5 mM
-0.3
-1.0
+0.1
+0.4
+0.1
pH
Minimal media pH7
+0.0
-0.7
+0.3
-0.3
+0.2
carbon source
L-Glutamic (C)
+0.1
-0.8
+0.2
+0.5
-0.3
nitrogen source
Putrescine (N)
+0.2
-0.6
-0.1
+0.4
-0.2
stress
Cholin acetate 40 mM
+0.2
+0.6
-0.4
-0.2
-0.3
stress
Lomefloxacin 0.0005 mM
+0.6
-0.5
+0.5
+0.0
-0.5
stress
Fusidic 0.1 mg/ml
-0.4
-0.4
+0.4
+0.4
-0.1
carbon source
D-Trehalose (C)
-0.2
-0.7
+0.5
+0.4
+0.1
stress
Spectinomycin 0.025 mg/ml
-0.2
+0.3
+0.5
+0.0
-0.4
carbon source
D-Fructose (C)
-0.1
+0.6
-0.1
-0.3
+0.4
stress
Benzalkonium Chloride 0.008 mg/ml
+0.1
-0.2
+0.4
+0.6
-0.1
carbon source
succinate (C)
+0.0
+0.7
-0.5
+0.2
+0.5
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
+0.1
+0.9
-0.3
carbon source
D-Glucose (C)
-0.2
+0.7
-0.0
-0.0
+0.5
carbon source
D-Xylose (C)
+0.2
+0.8
+0.2
+0.2
+0.1
carbon source
D-Glucose (C)
+0.1
+1.0
+0.2
+0.1
+0.3
carbon source
D-Ribose (C)
+0.1
+0.6
+0.4
+0.3
+0.4
stress
Sisomicin 0.001 mg/ml
+0.1
+0.9
+1.0
+0.2
+0.2
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