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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25870 and AO356_25875 overlap by 4 nucleotides
AO356_25875 and AO356_25880 are separated by 178 nucleotides
AO356_25880 and AO356_25885 overlap by 4 nucleotides
AO356_25885 and AO356_25890 are separated by 223 nucleotides
AO356_25870: AO356_25870 - secretion protein HlyD, at 5,847,828 to 5,849,141
_25870
AO356_25875: AO356_25875 - multidrug transporter, at 5,849,138 to 5,852,233
_25875
AO356_25880: AO356_25880 - acriflavine resistance protein B, at 5,852,412 to 5,855,516
_25880
AO356_25885: AO356_25885 - RND transporter, at 5,855,513 to 5,856,988
_25885
AO356_25890: AO356_25890 - enoyl-CoA hydratase, at 5,857,212 to 5,858,024
_25890
Group
Condition
AO356
_25870
AO356
_25875
AO356
_25880
AO356
_25885
AO356
_25890
stress
Bacitracin 2 mg/ml
-4.7
-4.2
-3.6
-4.3
-0.4
carbon source
Ethanol (C)
-1.4
-1.7
-1.6
-1.3
-0.1
carbon source
Ethanol (C)
-1.1
-1.4
-1.5
-1.5
-0.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-1.0
-1.2
-1.2
-1.0
-0.1
survival
4C survival; 1152 hrs
-0.5
-0.6
-0.6
-1.4
-0.7
survival
4C survival; 672 hrs
-0.9
-0.8
-0.8
-0.9
-0.2
survival
4C survival; 192 hrs
-0.9
-0.7
-0.6
-0.9
-0.3
stress
perchlorate 75 mM
-1.6
-0.5
-0.5
-0.4
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.9
-0.6
-0.5
-0.5
-0.3
pH
Minimal media pH9
-0.7
-0.6
-0.7
-0.4
-0.4
survival
4C survival; 360 hrs
-1.2
-0.6
-0.5
-0.3
-0.0
stress
Rifampicin 0.0024 mg/ml
-0.5
-0.4
-0.5
-0.6
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.8
-0.4
-0.2
-0.6
+0.2
stress
Chlorite 0.04 mM
-0.6
-0.4
-0.2
-0.7
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
-0.6
-0.3
-0.7
-0.4
stress
Chlorite 0.08 mM
-0.9
-0.2
-0.4
-0.4
+0.1
motility
outer cut, LB soft agar motility assay
-0.4
-0.4
-0.2
-0.5
-0.3
carbon source
L-Histidine (C)
-0.8
-0.5
-0.2
-0.0
-0.2
stress
Benzethonium chloride 0.025 mM
-0.4
-0.2
-0.5
-0.4
-0.2
stress
Lomefloxacin 0.0005 mM
-0.4
-0.6
-0.3
-0.3
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
-0.9
-0.3
-0.3
-0.4
stress
syringaldehyde 10 mM
-0.6
-0.5
-0.3
-0.1
-0.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.3
-0.4
-0.4
-0.0
stress
Sisomicin 0.001 mg/ml
-0.9
+0.2
-0.5
-0.3
+0.1
stress
Nalidixic 0.004 mg/ml
-0.3
-0.2
-0.5
-0.5
+0.3
carbon source
acetate (C)
-0.3
-0.3
-0.2
-0.5
+0.2
carbon source
acetate (C)
-0.5
-0.4
-0.3
-0.2
+0.6
carbon source
NAG (C)
+0.4
+0.4
+0.1
+0.3
-0.2
nitrogen source
Inosine (N)
+0.4
+0.4
+0.5
+0.5
-0.3
nitrogen source
Uridine (N)
+0.5
+0.3
+0.5
+0.5
-0.1
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