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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25680 and AO356_25685 are separated by 15 nucleotides
AO356_25685 and AO356_25690 are separated by 319 nucleotides
AO356_25690 and AO356_25695 are separated by 208 nucleotides
AO356_25695 and AO356_25700 are separated by 69 nucleotides
AO356_25680: AO356_25680 - carbon starvation protein A, at 5,807,013 to 5,809,073
_25680
AO356_25685: AO356_25685 - hypothetical protein, at 5,809,089 to 5,809,286
_25685
AO356_25690: AO356_25690 - chemotaxis protein, at 5,809,606 to 5,811,402
_25690
AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734
_25695
AO356_25700: AO356_25700 - hypothetical protein, at 5,813,804 to 5,814,799
_25700
Group
Condition
AO356
_25680
AO356
_25685
AO356
_25690
AO356
_25695
AO356
_25700
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
N.D.
-0.8
-0.1
-0.1
stress
Ceftazidime 0.2 mg/ml
N.D.
N.D.
-0.6
-0.2
-0.1
carbon source
Carbon source D-Glucose 10 mM
N.D.
N.D.
-0.5
-0.3
+0.1
lb
LB
N.D.
N.D.
-0.4
-0.0
-0.2
survival
4C survival; 1152 hrs
N.D.
N.D.
-0.2
-0.3
-0.1
stress
Aluminum chloride 5 mM
N.D.
N.D.
-0.5
-0.1
-0.1
pH
Minimal media pH8
N.D.
N.D.
-0.6
-0.0
+0.0
stress
Choline chloride 300 mM
N.D.
N.D.
-0.5
-0.0
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
N.D.
-0.5
+0.0
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
N.D.
-0.6
+0.2
-0.1
pH
Minimal media pH9
N.D.
N.D.
-0.2
-0.4
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
N.D.
N.D.
-0.4
+0.2
-0.3
carbon source
Carbon source D-Mannitol 10 mM
N.D.
N.D.
-0.3
-0.2
+0.2
stress
Paraquat dichloride 0.0625 mg/ml
N.D.
N.D.
+0.3
-0.3
-0.1
stress
copper (II) chloride 2.5 mM
N.D.
N.D.
+0.4
+0.0
-0.4
temperature
LB 37C
N.D.
N.D.
+0.3
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.5
-0.2
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
N.D.
N.D.
+0.7
-0.2
-0.1
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
-0.1
+0.3
+0.2
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.5
-0.1
+0.0
carbon source
D,L-Lactate (C)
N.D.
N.D.
+0.5
+0.1
-0.1
carbon source
pyruvate (C)
N.D.
N.D.
+0.5
+0.1
+0.0
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
+0.5
+0.0
+0.0
stress
Cobalt chloride 0.08 mM
N.D.
N.D.
+0.4
+0.2
+0.0
carbon source
L-Arabinose (C)
N.D.
N.D.
+0.3
+0.3
+0.1
stress
KB-half, Pseudo5 supernatant
N.D.
N.D.
+1.1
-0.1
-0.0
carbon source
D-Gluconic Acid (C)
N.D.
N.D.
+0.5
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.6
+0.3
+0.1
stress
Nickel (II) chloride 0.625 mM
N.D.
N.D.
+0.5
+0.4
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.7
+0.2
+0.5
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