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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25435 and AO356_25440 overlap by 4 nucleotides
AO356_25440 and AO356_25445 are separated by 152 nucleotides
AO356_25445 and AO356_25450 are separated by 36 nucleotides
AO356_25450 and AO356_25455 are separated by 26 nucleotides
AO356_25435: AO356_25435 - nodulation protein NolW, at 5,751,575 to 5,752,234
_25435
AO356_25440: AO356_25440 - histidine kinase, at 5,752,231 to 5,753,682
_25440
AO356_25445: AO356_25445 - hypothetical protein, at 5,753,835 to 5,754,116
_25445
AO356_25450: AO356_25450 - LysR family transcriptional regulator, at 5,754,153 to 5,755,094
_25450
AO356_25455: AO356_25455 - transcriptional regulator, at 5,755,121 to 5,756,140
_25455
Group
Condition
AO356
_25435
AO356
_25440
AO356
_25445
AO356
_25450
AO356
_25455
carbon source
L-Histidine (C)
+0.2
-0.1
-0.5
-0.6
-1.3
survival
4C survival; 192 hrs
-0.5
-0.6
+0.1
+0.3
-1.2
carbon source
L-Lysine (C)
-0.5
+0.1
-0.2
-1.0
-0.2
carbon source
D-Trehalose (C)
-0.2
+0.2
-0.2
-0.6
-0.9
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
-0.7
-0.6
-0.4
carbon source
L-Malic (C)
-0.5
-0.0
-0.3
-0.3
-0.5
stress
sodium fluoride 6.25 mM
-0.3
+0.0
+0.0
+0.1
-1.2
motility
outer cut, LB soft agar motility assay
+0.5
+0.3
+0.1
-0.1
-2.2
carbon source
Carbon source D-Mannitol 10 mM
-0.4
+0.1
-0.2
-0.4
-0.4
carbon source
Inosine (C)
+0.3
-0.3
-0.3
-0.6
-0.3
carbon source
Ethanol (C)
+0.2
+0.1
-0.1
-0.5
-0.7
carbon source
L-Glutamine (C)
+0.2
+0.1
+0.0
-0.3
-1.0
anaerobic
Nitrate reduction with yeast extract
+0.1
-0.2
-2.0
+0.9
+0.3
carbon source
L-Malic (C)
-0.5
+0.4
-0.1
-0.7
+0.1
carbon source
D,L-Lactate (C)
-0.2
+0.1
+0.1
-0.9
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-0.4
-0.4
+0.5
-0.4
survival
4C survival; 672 hrs
+0.1
-0.4
-0.1
+0.3
-0.6
pH
Minimal media pH7
+0.1
-0.8
-0.2
+0.1
+0.4
stress
Vanillin 2.5 mM
+0.2
-0.2
+0.4
-0.4
-0.3
carbon source
casaminos (C)
+0.3
-0.3
+0.2
+0.2
-0.5
nitrogen source
nitrite (N)
-0.2
+0.3
-0.3
-0.4
+0.6
carbon source
Carnitine Hydrochloride (C)
+0.5
-0.7
+0.1
+0.1
+0.1
nitrogen source
Carnitine Hydrochloride (N)
+0.4
-0.1
-0.0
+0.4
-0.6
stress
Cholin acetate 40 mM
-0.2
-0.2
-0.3
+0.5
+0.3
temperature
LB 10C
-0.0
-0.2
+0.4
+0.5
-0.3
stress
perchlorate 75 mM
+0.2
+0.2
-0.5
-0.2
+0.8
survival
4C survival; 24 hrs
+0.5
+0.1
-0.2
+0.5
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
+0.2
+0.5
+0.5
+0.4
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.3
+0.5
+0.2
+0.3
+1.9
stress
KB-half, Pseudo5 supernatant
+0.6
+0.6
+0.5
+0.8
+1.6
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