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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25410 and AO356_25415 are separated by 211 nucleotides
AO356_25415 and AO356_25420 are separated by 236 nucleotides
AO356_25420 and AO356_25425 are separated by 149 nucleotides
AO356_25425 and AO356_25430 are separated by 5 nucleotides
AO356_25410: AO356_25410 - LysR family transcriptional regulator, at 5,747,023 to 5,747,934
_25410
AO356_25415: AO356_25415 - pyridine nucleotide-disulfide oxidoreductase, at 5,748,146 to 5,749,348
_25415
AO356_25420: AO356_25420 - chemotaxis protein CheY, at 5,749,585 to 5,749,959
_25420
AO356_25425: AO356_25425 - AraC family transcriptional regulator, at 5,750,109 to 5,750,927
_25425
AO356_25430: AO356_25430 - phosphatidylethanolamine-binding protein, at 5,750,933 to 5,751,472
_25430
Group
Condition
AO356
_25410
AO356
_25415
AO356
_25420
AO356
_25425
AO356
_25430
stress
Bacitracin 2 mg/ml
-0.8
+0.0
-0.7
-0.2
-0.1
stress
nitrate 200 mM
-0.4
-0.2
-0.8
-0.0
-0.3
stress
Cephalothin 2 mg/ml
-0.2
+0.0
-1.4
-0.0
-0.1
survival
4C survival; 360 hrs
-0.7
-0.4
-0.5
+0.0
-0.0
carbon source
Carbon source Sucrose 10 mM
-0.7
-0.1
-0.5
-0.2
-0.2
stress
Benzethonium chloride 0.025 mM
-0.5
-0.1
-1.0
+0.2
-0.2
survival
4C survival; 1152 hrs
-0.2
-0.0
-0.7
-0.5
-0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
-0.6
-0.4
-0.1
-0.0
stress
nitrite 10 mM
-0.5
-0.1
-0.5
+0.1
-0.5
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.3
+0.0
-0.8
-0.3
-0.0
motility
outer cut, LB soft agar motility assay
-0.7
+0.2
-0.7
-0.0
-0.1
stress
Sisomicin 0.001 mg/ml
-0.8
+0.1
-0.5
+0.0
-0.0
motility
outer cut, LB soft agar motility assay
-1.0
+0.1
+0.3
-0.4
-0.3
temperature
LB 10C
-0.6
-0.0
-0.8
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.5
+0.0
-1.1
+0.6
-0.1
carbon source
Carbon source D-Mannitol 5 mM
+0.1
-0.1
-0.9
-0.2
+0.1
stress
perchlorate 75 mM
-0.7
-0.0
-0.5
+0.1
+0.1
carbon source
Carbon source D-Mannitol 10 mM
-0.2
+0.0
-0.6
-0.4
+0.2
carbon source
D,L-Lactate (C)
+0.0
-0.3
-0.7
+0.4
-0.1
pH
Minimal media pH6
+0.2
+0.2
-0.9
+0.0
-0.1
pH
Minimal media pH9
+0.5
-0.1
-0.8
-0.2
+0.1
nitrogen source
D-Serine (N)
+0.0
+0.0
-1.0
+0.4
-0.0
nitrogen source
L-tyrosine (N)
+0.3
+0.2
-0.9
-0.0
-0.0
anaerobic
Nitrate reduction with yeast extract
+0.2
+0.4
-0.5
-0.2
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.6
+0.2
+0.4
+0.1
+0.1
stress
Chlorite 0.08 mM
-0.6
+0.3
+0.5
+0.3
+0.1
stress
methylglyoxal 0.016 vol%
+0.0
+0.3
+0.6
+0.3
-0.4
carbon source
L-Arabinose (C)
+0.3
-0.2
+0.7
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
-0.0
+0.6
+0.6
+0.1
stress
Lomefloxacin 0.0005 mM
+0.9
+0.1
+0.3
-0.3
+0.4
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