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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25350 and AO356_25355 are separated by 45 nucleotides
AO356_25355 and AO356_25360 overlap by 4 nucleotides
AO356_25360 and AO356_25365 overlap by 1 nucleotides
AO356_25365 and AO356_25370 overlap by 1 nucleotides
AO356_25350: AO356_25350 - LysR family transcriptional regulator, at 5,734,886 to 5,735,800
_25350
AO356_25355: AO356_25355 - aspartate aminotransferase, at 5,735,846 to 5,737,060
_25355
AO356_25360: AO356_25360 - dimethylmenaquinone methyltransferase, at 5,737,057 to 5,737,695
_25360
AO356_25365: AO356_25365 - diguanylate cyclase, at 5,737,695 to 5,738,357
_25365
AO356_25370: AO356_25370 - diguanylate cyclase, at 5,738,357 to 5,739,022
_25370
Group
Condition
AO356
_25350
AO356
_25355
AO356
_25360
AO356
_25365
AO356
_25370
stress
copper (II) chloride 2.5 mM
+0.1
-0.4
-3.1
+0.1
N.D.
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.0
-0.9
-2.2
N.D.
stress
Sisomicin 0.001 mg/ml
-0.5
-0.1
-0.1
-0.9
N.D.
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.3
-1.0
-0.2
N.D.
lb
LB
-0.1
+0.1
-0.9
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
-0.2
+0.0
-0.9
-0.2
N.D.
carbon source
L-Alanine (C)
-0.4
-0.0
-0.9
+0.1
N.D.
stress
nitrite 10 mM
+0.2
-0.0
-0.6
-0.8
N.D.
stress
methylglyoxal 0.016 vol%
-0.1
-0.2
-1.2
+0.3
N.D.
stress
Cisplatin 0.0032 mg/ml
+0.2
+0.0
-1.0
-0.3
N.D.
stress
Aluminum chloride 5 mM
-0.1
+0.1
-0.1
-1.0
N.D.
carbon source
L-Lysine (C)
+0.0
+0.1
-0.8
-0.4
N.D.
stress
syringaldehyde 5 mM
+0.1
+0.0
-0.8
-0.3
N.D.
stress
Benzalkonium Chloride 0.016 mg/ml
+0.2
+0.3
-0.9
-0.4
N.D.
carbon source
D-Trehalose (C)
+0.2
+0.0
-0.9
-0.2
N.D.
pH
Minimal media pH8
+0.4
+0.4
-0.8
-0.3
N.D.
motility
outer cut, LB soft agar motility assay
+0.1
+0.5
-0.8
+0.3
N.D.
stress
Choline chloride 500 mM
+0.4
-0.3
-0.2
+0.4
N.D.
carbon source
D-Galactose (C)
+0.2
-0.3
+0.6
-0.3
N.D.
carbon source
pyruvate (C)
+0.1
-0.1
+0.7
-0.4
N.D.
carbon source
L-Lactate (C)
-0.2
-0.3
+0.9
+0.2
N.D.
carbon source
D-Fructose (C)
+0.2
-0.2
+0.9
-0.3
N.D.
stress
Cholin acetate 40 mM
-0.3
+0.2
+0.7
+0.2
N.D.
carbon source
Carbon source Sucrose 10 mM
+0.2
+0.5
+0.3
-0.3
N.D.
carbon source
Carbon source D-Mannitol 10 mM
-0.1
+0.3
+0.9
-0.2
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.6
-0.4
+0.4
+0.4
N.D.
carbon source
Carbon source D-Glucose 10 mM
+0.3
+0.3
+0.8
-0.3
N.D.
stress
Nickel (II) chloride 0.625 mM
+0.3
+0.2
+0.8
-0.2
N.D.
carbon source
D-Lactate (C)
+0.3
-0.1
+0.8
+0.1
N.D.
stress
Lomefloxacin 0.0005 mM
+0.3
-0.1
+0.7
+0.7
N.D.
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