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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_25165 and AO356_25170 overlap by 7 nucleotides
AO356_25170 and AO356_25175 overlap by 1 nucleotides
AO356_25175 and AO356_25180 are separated by 165 nucleotides
AO356_25180 and AO356_25185 are separated by 219 nucleotides
AO356_25165: AO356_25165 - protease, at 5,694,899 to 5,695,789
_25165
AO356_25170: AO356_25170 - lipid carrier protein, at 5,695,783 to 5,696,253
_25170
AO356_25175: AO356_25175 - zinc-binding protein, at 5,696,253 to 5,696,627
_25175
AO356_25180: AO356_25180 - DnrE protein, at 5,696,793 to 5,697,470
_25180
AO356_25185: AO356_25185 - hypothetical protein, at 5,697,690 to 5,698,337
_25185
Group
Condition
AO356
_25165
AO356
_25170
AO356
_25175
AO356
_25180
AO356
_25185
anaerobic
Nitrate reduction with yeast extract
-4.3
-4.0
N.D.
N.D.
-2.7
survival
4C survival; 360 hrs
-0.2
-2.2
N.D.
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
-1.3
-0.1
N.D.
N.D.
-0.5
carbon source
L-Lysine (C)
-0.2
-1.2
N.D.
N.D.
-0.1
survival
4C survival; 24 hrs
-0.3
-1.1
N.D.
N.D.
+0.1
stress
Chlorite 0.04 mM
-0.1
-1.3
N.D.
N.D.
+0.2
carbon source
D-Mannose (C)
+0.2
-1.2
N.D.
N.D.
-0.2
carbon source
casaminos (C)
-0.5
-0.3
N.D.
N.D.
-0.5
pH
Minimal media pH8
-0.2
-0.9
N.D.
N.D.
-0.0
carbon source
L-Proline (C)
-0.1
-0.6
N.D.
N.D.
-0.4
stress
Sisomicin 0.001 mg/ml
-0.2
-0.9
N.D.
N.D.
+0.0
survival
4C survival; 1152 hrs
+0.6
-1.3
N.D.
N.D.
-0.3
lb
LB
-0.8
+0.3
N.D.
N.D.
-0.5
carbon source
Uridine (C)
-0.2
-0.8
N.D.
N.D.
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.7
+0.4
N.D.
N.D.
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
-0.7
N.D.
N.D.
+0.2
stress
Ceftazidime 0.2 mg/ml
+0.5
-1.3
N.D.
N.D.
-0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.5
+0.3
N.D.
N.D.
-0.5
stress
Benzalkonium Chloride 0.016 mg/ml
-0.5
+0.2
N.D.
N.D.
-0.3
lb
LB
-0.4
+0.4
N.D.
N.D.
-0.5
stress
Cisplatin 0.0032 mg/ml
+0.1
-0.8
N.D.
N.D.
+0.3
carbon source
L-Lactate (C)
-0.7
+0.5
N.D.
N.D.
-0.0
stress
perchlorate 75 mM
-0.7
+0.5
N.D.
N.D.
+0.1
stress
Nalidixic 0.004 mg/ml
-0.6
+0.6
N.D.
N.D.
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.5
+0.4
N.D.
N.D.
+0.2
stress
Cobalt chloride 0.08 mM
-0.3
+0.7
N.D.
N.D.
-0.2
stress
KB-half, Pseudo5 supernatant
-0.6
+0.9
N.D.
N.D.
+0.0
motility
outer cut, LB soft agar motility assay
+0.4
+0.4
N.D.
N.D.
-0.3
stress
nitrite 10 mM
-0.3
+0.8
N.D.
N.D.
+0.3
stress
Rifampicin 0.0024 mg/ml
-0.4
+1.0
N.D.
N.D.
+0.2
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