Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_25055 and AO356_25060 are separated by 2 nucleotidesAO356_25060 and AO356_25065 overlap by 4 nucleotidesAO356_25065 and AO356_25070 are separated by 179 nucleotidesAO356_25070 and AO356_25075 are separated by 24 nucleotides AO356_25055: AO356_25055 - AsnC family transcriptional regulator, at 5,675,337 to 5,675,795 _25055 AO356_25060: AO356_25060 - protein nirF, at 5,675,798 to 5,676,976 _25060 AO356_25065: AO356_25065 - disulfide bond formation protein DsbD, at 5,676,973 to 5,677,302 _25065 AO356_25070: AO356_25070 - cytochrome C biogenesis protein CcsA, at 5,677,482 to 5,677,790 _25070 AO356_25075: AO356_25075 - nitrite reductase, at 5,677,815 to 5,679,494 _25075
Group Condition AO356_25055 AO356_25060 AO356_25065 AO356_25070 AO356_25075
stress nitrite 10 mM -0.6 -0.5 N.D. N.D. -0.8
motility outer cut, LB soft agar motility assay -0.3 -0.9 N.D. N.D. +0.2
stress Cholin acetate 40 mM -0.4 -0.7 N.D. N.D. +0.0
motility outer cut, LB soft agar motility assay -0.7 -0.3 N.D. N.D. +0.1
stress 1-ethyl-3-methylimidazolium acetate 5 mM -0.5 -0.3 N.D. N.D. -0.1
carbon source L-Histidine (C) -0.6 -0.1 N.D. N.D. -0.1
stress acetate 40 mM -0.5 -0.6 N.D. N.D. +0.2
lb LB -0.4 -0.3 N.D. N.D. -0.2
motility outer cut, LB soft agar motility assay -0.7 +0.0 N.D. N.D. -0.1
stress Cephalothin 2 mg/ml -0.5 -0.3 N.D. N.D. +0.0
stress 1-ethyl-3-methylimidazolium acetate 10 mM -0.3 -0.5 N.D. N.D. +0.1
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.4 -0.5 N.D. N.D. -0.6
survival 4C survival; 24 hrs +0.1 -0.3 N.D. N.D. -0.4
stress Ceftazidime 0.2 mg/ml -0.5 -0.1 N.D. N.D. +0.1
carbon source acetate (C) -0.3 +0.2 N.D. N.D. -0.4
stress Thallium(I) acetate 0.008 mg/ml -0.7 +0.1 N.D. N.D. +0.1
carbon source L-Lysine (C) -0.6 +0.1 N.D. N.D. +0.0
stress Cholin acetate 20 mM -0.3 -0.3 N.D. N.D. +0.3
stress perchlorate 75 mM +0.3 -0.4 N.D. N.D. -0.0
carbon source D-Xylose (C) +0.3 -0.4 N.D. N.D. +0.0
stress Vanillin 2.5 mM -0.3 +0.2 N.D. N.D. +0.2
stress Cisplatin 0.0032 mg/ml -0.4 +0.4 N.D. N.D. +0.3
stress Paraquat dichloride 0.0625 mg/ml -0.4 +0.5 N.D. N.D. +0.1
stress Paraquat dichloride 0.0625 mg/ml -0.4 +0.5 N.D. N.D. +0.2
nitrogen source Putrescine (N) +0.5 -0.3 N.D. N.D. +0.2
carbon source D-Mannose (C) +0.2 -0.2 N.D. N.D. +0.4
motility outer cut, LB soft agar motility assay +0.2 +0.6 N.D. N.D. -0.2
anaerobic Nitrate reduction with yeast extract +1.0 +0.4 N.D. N.D. -0.3
stress KB-half, Pseudo5 supernatant +1.0 +0.3 N.D. N.D. +0.1
stress KB-half, Pseudo11 supernatant, 100 uM FeCl3 +0.9 +0.3 N.D. N.D. +0.4
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