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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_24960 and AO356_24965 are separated by 112 nucleotides
AO356_24965 and AO356_24970 are separated by 141 nucleotides
AO356_24970 and AO356_24975 are separated by 137 nucleotides
AO356_24975 and AO356_24980 are separated by 257 nucleotides
AO356_24960: AO356_24960 - hydroxyproline-2-epimerase, at 5,654,494 to 5,655,426
_24960
AO356_24965: AO356_24965 - GntR family transcriptional regulator, at 5,655,539 to 5,656,210
_24965
AO356_24970: AO356_24970 - MFS transporter, at 5,656,352 to 5,657,518
_24970
AO356_24975: AO356_24975 - GntR family transcriptional regulator, at 5,657,656 to 5,659,047
_24975
AO356_24980: AO356_24980 - TonB-dependent receptor, at 5,659,305 to 5,661,446
_24980
Group
Condition
AO356
_24960
AO356
_24965
AO356
_24970
AO356
_24975
AO356
_24980
nitrogen source
D-Serine (N)
-0.1
-4.3
-0.3
+0.2
-0.1
carbon source
D-Trehalose (C)
+0.1
-2.1
-0.0
+0.1
-0.1
resistance
20 mM putrescine
-0.2
-1.0
-0.2
+0.0
+0.0
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.2
-1.3
-0.1
+0.1
-0.0
stress
Tetracycline 0.0001 mg/ml
-0.0
-1.3
-0.0
-0.0
+0.1
carbon source
Glycerol (C)
-0.1
-1.2
+0.2
+0.1
-0.1
nitrogen source
Gly-Glu (N)
+0.2
-1.0
-0.1
-0.2
-0.0
nitrogen source
Inosine (N)
+0.1
-0.8
-0.4
-0.1
+0.1
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.2
-0.9
-0.1
+0.2
-0.1
carbon source
m-Inositol (C)
-0.3
-0.7
+0.2
+0.1
-0.1
carbon source
L-Arabinose (C)
+0.6
-1.2
+0.1
-0.2
+0.2
carbon source
D-Trehalose (C)
+0.2
-0.9
+0.3
+0.1
+0.1
stress
Benzalkonium Chloride 0.016 mg/ml
+0.3
-0.8
-0.1
+0.2
+0.2
stress
KB-half, Pseudo5 supernatant
+0.4
-0.6
+0.2
-0.1
+0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.4
-0.7
+0.2
-0.2
+0.2
stress
Nickel (II) chloride 0.625 mM
+0.7
-0.5
-0.1
+0.1
-0.1
stress
Lomefloxacin 0.0005 mM
-0.4
+0.7
-0.0
-0.2
+0.2
stress
methylglyoxal 0.016 vol%
-0.2
+0.7
-0.2
+0.3
-0.2
carbon source
D-Gluconic Acid (C)
+0.2
+0.8
-0.2
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.4
+0.8
-0.1
-0.3
+0.1
carbon source
L-Asparagine (C)
+0.3
+0.8
+0.1
+0.0
-0.2
carbon source
L-Histidine (C)
+0.2
+1.1
-0.0
-0.1
-0.2
carbon source
L-Histidine (C)
+0.2
+1.0
+0.2
-0.2
-0.2
stress
Paraquat dichloride 0.0625 mg/ml
+0.5
+0.9
-0.1
-0.1
-0.0
nitrogen source
L-Phenylalanine (N)
-0.0
+1.2
-0.0
+0.1
+0.0
stress
Chlorite 0.04 mM
+0.3
+0.8
+0.2
-0.0
-0.1
carbon source
D-Ribose (C)
+0.5
+0.6
+0.2
+0.1
-0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.5
+0.6
+0.1
+0.1
+0.4
stress
Cholin acetate 20 mM
+0.5
+1.1
+0.1
-0.0
+0.0
nitrogen source
L-Leucine (N)
-0.0
+2.6
-0.1
+0.3
-0.1
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