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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24880 and AO356_24885 are separated by 36 nucleotides
AO356_24885 and AO356_24890 overlap by 1 nucleotides
AO356_24890 and AO356_24895 are separated by 51 nucleotides
AO356_24895 and AO356_24900 are separated by 66 nucleotides
AO356_24880: AO356_24880 - ABC transporter substrate-binding protein, at 5,638,484 to 5,639,461
_24880
AO356_24885: AO356_24885 - pyruvate dehydrogenase, at 5,639,498 to 5,640,514
_24885
AO356_24890: AO356_24890 - acetoin dehydrogenase, at 5,640,514 to 5,641,626
_24890
AO356_24895: AO356_24895 - butanediol dehydrogenase, at 5,641,678 to 5,642,772
_24895
AO356_24900: AO356_24900 - damage-inducible protein DinB, at 5,642,839 to 5,643,393
_24900
Group
Condition
AO356
_24880
AO356
_24885
AO356
_24890
AO356
_24895
AO356
_24900
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.6
-0.1
-0.5
-0.8
-0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.3
+0.2
-0.7
-0.4
-0.0
motility
outer cut, LB soft agar motility assay
-2.1
+0.5
-0.8
-0.1
+0.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.6
+0.1
-0.2
-0.1
-0.0
carbon source
Carbon source D-Mannitol 5 mM
-1.2
-0.4
+0.2
-0.1
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
-1.1
-0.3
+0.0
-0.3
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.7
-0.5
-0.6
-0.6
-0.4
carbon source
Carbon source D-Mannitol 10 mM
-0.7
-0.6
+0.2
+0.1
-0.4
nitrogen source
Uridine (N)
-0.7
-0.5
-0.2
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-1.2
+0.1
-0.7
+0.2
+0.3
carbon source
Carbon source Sucrose 2.5 mM
-0.6
-0.3
-0.1
+0.2
-0.3
stress
Choline chloride 300 mM
-0.3
-0.5
-0.5
+0.1
+0.3
nitrogen source
L-Phenylalanine (N)
+0.3
-0.6
-0.4
-0.1
-0.2
stress
Chlorite 0.04 mM
-0.5
-0.6
+0.2
-0.5
+0.5
stress
Paraquat dichloride 0.0625 mg/ml
-0.6
-0.7
+0.1
+0.3
+0.0
carbon source
Carbon source Sucrose 5 mM
-0.9
-0.2
-0.2
+0.1
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.3
-0.3
+0.2
+0.4
stress
Aluminum chloride 5 mM
+0.6
-0.3
+0.2
-0.6
+0.1
stress
Cobalt chloride 0.08 mM
+0.5
-0.6
+0.3
-0.2
+0.0
nitrogen source
Cytosine (N)
-0.3
-0.4
+0.2
+0.3
+0.4
stress
KB-half, Pseudo5 supernatant
+1.3
-0.3
+0.1
-0.4
-0.5
stress
Lomefloxacin 0.0005 mM
-0.1
+0.1
-0.5
+0.4
+0.4
carbon source
D-Galactose (C)
+0.5
-0.6
+0.3
+0.1
+0.2
carbon source
D-Xylose (C)
+0.6
-0.0
+0.1
-0.4
+0.4
stress
Sisomicin 0.001 mg/ml
+0.3
+0.7
+0.1
-0.8
+0.4
stress
copper (II) chloride 2.5 mM
+0.2
-0.4
+0.5
+0.8
-0.3
anaerobic
Nitrate reduction with yeast extract
+0.4
-0.5
+0.1
+0.4
+0.5
survival
4C survival; 1152 hrs
+0.8
+0.4
+0.7
+0.0
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.5
+0.4
+0.3
+0.1
+0.4
carbon source
D-Glucose (C)
+0.9
-0.1
+0.3
+0.4
+0.4
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