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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24840 and AO356_24845 are separated by 586 nucleotides
AO356_24845 and AO356_24850 overlap by 4 nucleotides
AO356_24850 and AO356_24855 are separated by 225 nucleotides
AO356_24855 and AO356_24860 are separated by 168 nucleotides
AO356_24840: AO356_24840 - hypothetical protein, at 5,629,516 to 5,630,148
_24840
AO356_24845: AO356_24845 - ATPase, at 5,630,735 to 5,632,045
_24845
AO356_24850: AO356_24850 - chemotaxis protein CheY, at 5,632,042 to 5,632,782
_24850
AO356_24855: AO356_24855 - hypothetical protein, at 5,633,008 to 5,633,271
_24855
AO356_24860: AO356_24860 - cytochrome C biogenesis protein, at 5,633,440 to 5,634,648
_24860
Group
Condition
AO356
_24840
AO356
_24845
AO356
_24850
AO356
_24855
AO356
_24860
pH
Minimal media pH9
+0.2
-5.6
-0.8
-0.6
-0.1
pH
Minimal media pH6
+0.2
-6.0
-0.1
-0.4
-0.2
stress
nitrite 10 mM
-0.3
-4.6
-0.6
-0.3
+0.4
motility
outer cut, LB soft agar motility assay
-0.8
-3.2
-0.5
-0.6
-0.2
nitrogen source
L-Leucine (N)
+0.3
-5.5
+0.3
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
-3.9
+0.1
-0.3
-0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.1
-4.5
-0.2
+0.2
-0.1
survival
4C survival; 192 hrs
+0.1
-4.1
-0.4
-0.1
-0.1
nitrogen source
L-Isoleucine (N)
+0.1
-4.5
+0.2
+0.1
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
-4.9
+0.3
+0.4
-0.1
carbon source
L-Histidine (C)
-0.3
-3.0
-0.2
-0.7
+0.2
carbon source
D-Galactose (C)
-0.2
-2.9
-0.4
-0.1
-0.4
carbon source
L-Histidine (C)
-0.0
-3.9
+0.0
-0.4
+0.2
carbon source
L-Arginine (C)
-0.2
-3.2
-0.5
-0.1
-0.0
survival
4C survival; 360 hrs
+0.3
-3.0
-1.2
-0.1
+0.0
carbon source
D-Trehalose (C)
-0.2
-3.0
-0.5
-0.2
+0.1
nitrogen source
Uridine (N)
-0.1
-3.4
+0.0
-0.0
-0.3
carbon source
D-Fructose (C)
-0.3
-3.3
+0.2
-0.1
-0.0
pH
Minimal media pH6
+0.1
-3.3
-0.1
-0.3
-0.1
carbon source
Ethanol (C)
-0.1
-2.9
-0.4
-0.1
+0.2
carbon source
L-Lysine (C)
-0.0
-3.4
+0.2
-0.2
+0.1
nitrogen source
Gly-Glu (N)
+0.2
-3.7
+0.5
+0.0
-0.2
carbon source
Ethanol (C)
+0.0
-2.7
-0.4
-0.4
+0.3
nitrogen source
Putrescine (N)
+0.1
-3.4
+0.3
+0.0
+0.0
carbon source
Putrescine (C)
+0.2
-3.3
+0.6
+0.0
-0.4
survival
4C survival; 1152 hrs
+0.2
-3.3
-0.4
+0.2
+0.5
phage
P5ss-5 phage 10-1 dilution SM calcl2
-1.0
-2.0
+0.5
-0.4
+0.2
nitrogen source
L-tyrosine (N)
+0.3
-3.4
-0.2
+0.8
-0.0
stress
syringaldehyde 10 mM
-0.0
-2.7
+0.6
+0.2
-0.3
nitrogen source
Carnitine Hydrochloride (N)
+0.3
-2.6
+0.6
+0.3
-0.2
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