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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24660 and AO356_24665 are separated by 9 nucleotides
AO356_24665 and AO356_24670 are separated by 600 nucleotides
AO356_24670 and AO356_24675 are separated by 696 nucleotides
AO356_24675 and AO356_24680 are separated by 15 nucleotides
AO356_24660: AO356_24660 - hypothetical protein, at 5,577,251 to 5,578,195
_24660
AO356_24665: AO356_24665 - AAA family ATPase, at 5,578,205 to 5,579,164
_24665
AO356_24670: AO356_24670 - hypothetical protein, at 5,579,765 to 5,580,133
_24670
AO356_24675: AO356_24675 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 5,580,830 to 5,581,807
_24675
AO356_24680: AO356_24680 - MFS transporter, at 5,581,823 to 5,583,121
_24680
Group
Condition
AO356
_24660
AO356
_24665
AO356
_24670
AO356
_24675
AO356
_24680
stress
Benzethonium chloride 0.025 mM
N.D.
-5.3
N.D.
-0.3
+0.0
stress
Cholin acetate 40 mM
N.D.
-5.4
N.D.
+0.2
+0.0
stress
Benzalkonium Chloride 0.008 mg/ml
N.D.
-4.7
N.D.
-0.3
+0.0
stress
Aluminum chloride 5 mM
N.D.
-4.2
N.D.
-0.6
-0.0
stress
Bacitracin 2 mg/ml
N.D.
-4.1
N.D.
-0.6
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
N.D.
-4.9
N.D.
+0.1
+0.4
stress
Rifampicin 0.0024 mg/ml
N.D.
-3.4
N.D.
-0.3
+0.3
stress
Spectinomycin 0.025 mg/ml
N.D.
-2.7
N.D.
-0.2
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
-1.4
N.D.
-1.0
-0.4
stress
Doxycycline hyclate 0.0001 mg/ml
N.D.
-3.1
N.D.
+0.0
+0.4
stress
1-ethyl-3-methylimidazolium lysine 10 mM
N.D.
-2.0
N.D.
-0.1
-0.3
stress
Nalidixic 0.004 mg/ml
N.D.
-1.8
N.D.
-0.7
+0.1
stress
Sisomicin 0.001 mg/ml
N.D.
-2.8
N.D.
+0.2
+0.4
stress
Rifampicin 0.0016 mg/ml
N.D.
-2.1
N.D.
-0.4
+0.3
stress
Spectinomycin 0.0125 mg/ml
N.D.
-1.9
N.D.
-0.2
+0.0
stress
Nickel (II) chloride 0.625 mM
N.D.
-2.0
N.D.
-0.1
+0.0
stress
Nickel (II) chloride 0.625 mM
N.D.
-1.7
N.D.
-0.2
-0.2
stress
Fusidic 0.1 mg/ml
N.D.
-1.8
N.D.
-0.2
-0.1
stress
Tetracycline 0.0001 mg/ml
N.D.
-1.6
N.D.
-0.1
+0.1
stress
Cobalt chloride 0.08 mM
N.D.
-1.6
N.D.
-0.2
+0.1
stress
D-Cycloserine 0.1 mg/ml
N.D.
-1.0
N.D.
-0.7
+0.1
stress
Lomefloxacin 0.0005 mM
N.D.
-1.6
N.D.
+0.2
-0.1
stress
Cobalt chloride 0.08 mM
N.D.
-1.5
N.D.
+0.1
+0.0
carbon source
Inosine (C)
N.D.
-1.5
N.D.
-0.1
+0.2
stress
copper (II) chloride 2.5 mM
N.D.
-1.6
N.D.
+0.1
+0.1
stress
methylglyoxal 0.016 vol%
N.D.
-1.4
N.D.
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
N.D.
-1.1
N.D.
+0.2
-0.3
survival
4C survival; 672 hrs
N.D.
-1.4
N.D.
+0.3
-0.1
stress
Cephalothin 2 mg/ml
N.D.
-1.2
N.D.
+0.0
+0.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
N.D.
+1.5
N.D.
+0.2
+0.1
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