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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24630 and AO356_24635 are separated by 191 nucleotides
AO356_24635 and AO356_24640 overlap by 44 nucleotides
AO356_24640 and AO356_24645 overlap by 4 nucleotides
AO356_24645 and AO356_24650 overlap by 4 nucleotides
AO356_24630: AO356_24630 - exonuclease SbcD, at 5,570,731 to 5,571,975
_24630
AO356_24635: AO356_24635 - hypothetical protein, at 5,572,167 to 5,572,364
_24635
AO356_24640: AO356_24640 - protein BatD, at 5,572,321 to 5,573,958
_24640
AO356_24645: AO356_24645 - hypothetical protein, at 5,573,955 to 5,575,691
_24645
AO356_24650: AO356_24650 - BatB protein, at 5,575,688 to 5,576,767
_24650
Group
Condition
AO356
_24630
AO356
_24635
AO356
_24640
AO356
_24645
AO356
_24650
stress
Benzethonium chloride 0.025 mM
+0.0
N.D.
-6.0
-5.4
-5.2
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
N.D.
-5.3
-5.5
-3.2
stress
Cholin acetate 40 mM
-0.1
N.D.
-5.3
-4.8
-3.0
stress
Benzalkonium Chloride 0.008 mg/ml
+0.1
N.D.
-5.3
-4.3
-2.8
stress
Bacitracin 2 mg/ml
+0.2
N.D.
-4.5
-5.2
-2.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.2
N.D.
-3.3
-3.2
-3.4
stress
Rifampicin 0.0024 mg/ml
+0.2
N.D.
-3.4
-4.2
-2.6
stress
Aluminum chloride 5 mM
+0.2
N.D.
-3.3
-3.8
-2.6
stress
Spectinomycin 0.025 mg/ml
+0.1
N.D.
-2.8
-3.8
-1.2
stress
Sisomicin 0.001 mg/ml
+0.4
N.D.
-2.4
-3.3
-1.9
stress
copper (II) chloride 2.5 mM
-0.3
N.D.
-1.8
-2.5
-1.8
stress
Fusidic 0.1 mg/ml
-0.2
N.D.
-2.2
-2.0
-2.1
stress
Nalidixic 0.004 mg/ml
+0.1
N.D.
-1.9
-2.9
-1.5
stress
Lomefloxacin 0.0005 mM
+0.7
N.D.
-2.0
-2.6
-2.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.1
N.D.
-2.0
-2.2
-1.8
stress
Spectinomycin 0.0125 mg/ml
+0.1
N.D.
-2.7
-1.8
-1.6
stress
Rifampicin 0.0016 mg/ml
+0.4
N.D.
-1.7
-2.4
-1.7
stress
Cobalt chloride 0.08 mM
-0.3
N.D.
-1.8
-1.9
-1.2
stress
Cephalothin 2 mg/ml
-0.0
N.D.
-1.9
-2.0
-1.0
stress
Nickel (II) chloride 0.625 mM
-0.3
N.D.
-2.0
-1.6
-1.1
survival
4C survival; 360 hrs
-0.4
N.D.
-1.9
-1.3
-1.3
stress
Nickel (II) chloride 0.625 mM
-0.2
N.D.
-1.4
-1.9
-1.0
stress
Cobalt chloride 0.08 mM
-0.2
N.D.
-1.6
-1.8
-0.9
stress
Tetracycline 0.0001 mg/ml
-0.3
N.D.
-1.4
-1.8
-0.9
stress
methylglyoxal 0.016 vol%
+0.4
N.D.
-1.5
-1.6
-1.3
stress
Ceftazidime 0.2 mg/ml
-0.3
N.D.
-1.1
-1.5
-1.0
carbon source
Putrescine (C)
-0.1
N.D.
-1.3
-1.1
-0.9
carbon source
Inosine (C)
-0.3
N.D.
-0.8
-1.2
-1.0
survival
4C survival; 1152 hrs
+0.1
N.D.
-0.7
-1.2
-1.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.6
N.D.
+1.0
+1.4
+1.0
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