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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24595 and AO356_24600 are separated by 12 nucleotides
AO356_24600 and AO356_24605 are separated by 237 nucleotides
AO356_24605 and AO356_24610 overlap by 14 nucleotides
AO356_24610 and AO356_24615 are separated by 156 nucleotides
AO356_24595: AO356_24595 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43)
(from data)
, at 5,561,427 to 5,562,419
_24595
AO356_24600: AO356_24600 - ketoglutarate semialdehyde dehydrogenase, at 5,562,432 to 5,564,012
_24600
AO356_24605: AO356_24605 - hypothetical protein, at 5,564,250 to 5,564,546
_24605
AO356_24610: AO356_24610 - 3-carboxymuconate cyclase, at 5,564,533 to 5,565,708
_24610
AO356_24615: AO356_24615 - hypothetical protein, at 5,565,865 to 5,566,044
_24615
Group
Condition
AO356
_24595
AO356
_24600
AO356
_24605
AO356
_24610
AO356
_24615
carbon source
L-Arabinose (C)
-4.7
-1.9
N.D.
-0.1
-0.2
carbon source
L-Arabinose (C)
-4.4
-1.7
N.D.
-0.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.7
-0.4
N.D.
-0.0
-0.9
motility
outer cut, LB soft agar motility assay
-0.0
-0.6
N.D.
-0.2
-0.9
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.3
-1.1
N.D.
+0.2
-0.5
carbon source
Carbon source D-Glucose 10 mM
-0.2
-0.2
N.D.
-0.7
-0.3
stress
Chlorite 0.04 mM
-0.2
-1.5
N.D.
+0.0
+0.2
stress
Chlorite 0.08 mM
-0.2
-0.3
N.D.
-0.5
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
-1.5
N.D.
+0.1
-0.0
pH
Minimal media pH7
+0.1
-0.5
N.D.
-0.3
-0.5
nitrogen source
nitrite (N)
+0.1
-0.5
N.D.
-0.3
-0.4
stress
acetate 40 mM
-0.5
-0.2
N.D.
+0.0
-0.4
carbon source
Carbon source D-Glucose 10 mM
-0.5
+0.1
N.D.
-0.6
-0.0
carbon source
D-Glucose (C)
-0.3
+0.1
N.D.
-0.4
-0.4
carbon source
D-Mannose (C)
-0.7
-0.4
N.D.
+0.0
+0.3
carbon source
D-Xylose (C)
+0.1
-0.8
N.D.
+0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.3
-1.1
N.D.
-0.1
+0.1
stress
Lomefloxacin 0.0005 mM
-0.1
-0.3
N.D.
+0.3
-0.7
survival
4C survival; 360 hrs
-0.1
-0.3
N.D.
+0.3
-0.6
pH
Minimal media pH6
+0.6
-0.1
N.D.
-0.6
-0.6
stress
Spectinomycin 0.0125 mg/ml
+0.1
-0.4
N.D.
+0.2
-0.5
carbon source
L-Alanine (C)
-0.6
+0.3
N.D.
+0.1
-0.4
stress
copper (II) chloride 2.5 mM
-0.6
-0.1
N.D.
+0.5
-0.4
pH
Minimal media pH6
+0.6
-0.3
N.D.
-0.4
-0.3
stress
nitrate 200 mM
+0.6
-0.3
N.D.
-0.4
-0.1
carbon source
D-Galactose (C)
+0.5
+0.1
N.D.
-0.5
-0.1
carbon source
D-Galactose (C)
+0.8
-0.0
N.D.
-0.4
-0.1
stress
Cephalothin 2 mg/ml
+0.4
-0.4
N.D.
+0.2
+0.3
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.8
-0.3
N.D.
+0.2
+0.7
stress
KB-half, Pseudo5 supernatant
+0.0
+0.9
N.D.
+0.6
+0.3
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