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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24540 and AO356_24545 overlap by 4 nucleotides
AO356_24545 and AO356_24550 are separated by 45 nucleotides
AO356_24550 and AO356_24555 overlap by 4 nucleotides
AO356_24555 and AO356_24560 are separated by 13 nucleotides
AO356_24540: AO356_24540 - serine/threonine protein phosphatase, at 5,542,461 to 5,543,432
_24540
AO356_24545: AO356_24545 - peptidase S54, at 5,543,429 to 5,544,301
_24545
AO356_24550: AO356_24550 - hypothetical protein, at 5,544,347 to 5,544,607
_24550
AO356_24555: AO356_24555 - hypothetical protein, at 5,544,604 to 5,545,434
_24555
AO356_24560: AO356_24560 - aminopeptidase, at 5,545,448 to 5,548,105
_24560
Group
Condition
AO356
_24540
AO356
_24545
AO356
_24550
AO356
_24555
AO356
_24560
carbon source
acetate (C)
-2.3
-0.6
-1.9
+0.2
+0.1
carbon source
succinate (C)
-0.6
+0.2
-3.8
+0.3
+0.1
carbon source
acetate (C)
-1.9
-0.3
-1.8
+0.3
+0.0
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.3
-0.0
+0.1
-2.9
-0.2
carbon source
succinate (C)
-0.0
-0.2
-2.3
-0.6
+0.0
motility
outer cut, LB soft agar motility assay
+0.3
+0.3
-2.7
-0.7
-0.0
motility
outer cut, LB soft agar motility assay
+0.7
+0.2
-2.2
-1.5
-0.1
carbon source
L-Histidine (C)
-1.0
-0.3
-1.5
-0.1
+0.0
stress
copper (II) chloride 2.5 mM
-0.6
-0.5
-2.8
+1.3
-0.2
carbon source
L-Leucine (C)
-1.4
-0.5
-0.6
-0.1
-0.1
carbon source
a-Ketoglutaric (C)
-0.5
-0.0
-0.9
-1.5
+0.1
stress
Chlorite 0.08 mM
-0.6
-0.5
-1.1
-0.7
+0.2
carbon source
D-Alanine (C)
-0.4
+0.2
-1.1
-1.2
+0.0
carbon source
a-Ketoglutaric (C)
-0.2
-0.0
-1.0
-1.3
+0.0
stress
Sisomicin 0.001 mg/ml
-0.2
-3.4
+1.8
-0.3
-0.2
anaerobic
Nitrate reduction with yeast extract
-0.5
-1.3
+0.1
-0.4
-0.1
nitrogen source
L-Leucine (N)
-1.4
+0.1
+0.3
-0.8
-0.2
stress
nitrite 10 mM
-0.3
-0.4
-2.1
+0.7
+0.1
stress
Cobalt chloride 0.08 mM
-0.4
+0.2
-1.8
+0.5
-0.1
carbon source
L-Lysine (C)
-1.0
-1.2
+1.2
-0.2
-0.4
temperature
LB 20C
-0.0
-0.3
-1.5
+0.6
+0.0
nitrogen source
Cytosine (N)
-0.2
-0.5
-1.2
+0.9
-0.1
pH
Minimal media pH9
-0.1
-0.5
-0.9
+0.9
-0.3
carbon source
L-Lysine (C)
-1.1
+0.4
+0.7
-0.3
-0.3
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.8
-0.1
+1.2
-0.5
-0.0
stress
Cisplatin 0.0032 mg/ml
-0.5
+0.1
-0.8
+1.1
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.7
+0.5
+1.4
-0.1
survival
4C survival; 1152 hrs
+0.7
-0.5
-0.3
+1.2
+0.0
resistance
20 mM putrescine
-0.5
-0.1
+0.7
+1.2
-0.1
stress
methylglyoxal 0.016 vol%
-0.7
+0.7
+1.0
+0.9
+0.1
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