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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24415 and AO356_24420 are separated by 23 nucleotides
AO356_24420 and AO356_24425 are separated by 146 nucleotides
AO356_24425 and AO356_24430 are separated by 175 nucleotides
AO356_24430 and AO356_24435 are separated by 55 nucleotides
AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182
_24415
AO356_24420: AO356_24420 - XRE family transcriptional regulator, at 5,514,206 to 5,515,288
_24420
AO356_24425: AO356_24425 - hypothetical protein, at 5,515,435 to 5,515,923
_24425
AO356_24430: AO356_24430 - lysine transporter LysE, at 5,516,099 to 5,516,686
_24430
AO356_24435: AO356_24435 - AraC family transcriptional regulator, at 5,516,742 to 5,517,566
_24435
Group
Condition
AO356
_24415
AO356
_24420
AO356
_24425
AO356
_24430
AO356
_24435
stress
copper (II) chloride 2.5 mM
-0.7
-0.8
N.D.
-0.5
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.9
-0.0
N.D.
-0.5
-0.2
stress
Chlorite 0.04 mM
+0.2
-1.1
N.D.
-0.6
+0.0
motility
outer cut, LB soft agar motility assay
-1.1
+0.4
N.D.
-0.4
-0.3
pH
Minimal media pH6
-0.4
-0.4
N.D.
-0.2
-0.2
survival
4C survival; 192 hrs
-0.5
-0.2
N.D.
-0.7
+0.2
stress
Vanillin 1.25 mM
-0.3
-0.1
N.D.
-0.7
+0.0
pH
Minimal media pH8
-0.4
+0.3
N.D.
-0.9
-0.1
stress
Cholin acetate 40 mM
-0.5
-0.2
N.D.
+0.0
-0.3
carbon source
Fumarate (C)
-0.4
-0.4
N.D.
+0.1
-0.3
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.2
-0.2
N.D.
-0.5
+0.2
survival
4C survival; 1152 hrs
-0.5
+0.1
N.D.
+0.0
-0.4
stress
methylglyoxal 0.016 vol%
+0.1
-0.6
N.D.
-0.2
+0.2
carbon source
L-Aspartic Acid (C)
-0.5
-0.2
N.D.
+0.2
+0.1
stress
Spectinomycin 0.0125 mg/ml
-0.4
-0.3
N.D.
+0.3
-0.1
carbon source
Fumarate (C)
-0.6
+0.3
N.D.
+0.1
-0.1
carbon source
D-Ribose (C)
+0.3
+0.2
N.D.
-0.5
-0.1
anaerobic
Nitrate reduction with yeast extract
+0.5
-0.5
N.D.
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.8
-0.2
N.D.
+0.8
+0.2
carbon source
acetate (C)
+0.6
+0.0
N.D.
-0.2
-0.3
carbon source
Carbon source Sucrose 10 mM
+0.4
-0.5
N.D.
+0.3
-0.0
carbon source
D-Mannose (C)
+0.3
-0.4
N.D.
+0.4
-0.2
stress
Cholin acetate 20 mM
+0.7
-0.3
N.D.
+0.1
-0.0
carbon source
L-Arginine (C)
-0.4
+0.2
N.D.
+0.3
+0.3
stress
Lomefloxacin 0.0005 mM
+0.2
+0.6
N.D.
-0.4
+0.1
stress
Spectinomycin 0.025 mg/ml
-0.4
+0.6
N.D.
+0.3
+0.0
stress
nitrite 10 mM
+0.6
-0.2
N.D.
-0.1
+0.2
stress
nitrate 200 mM
+0.7
+0.4
N.D.
-0.3
-0.1
stress
Choline chloride 500 mM
+0.3
+0.7
N.D.
-0.0
-0.1
nitrogen source
D-Serine (N)
+0.1
+0.6
N.D.
+0.3
+0.3
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