Fitness for 5 genes in Pseudomonas fluorescens FW300-N2C3

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500 ntAO356_24415 and AO356_24420 are separated by 23 nucleotidesAO356_24420 and AO356_24425 are separated by 146 nucleotidesAO356_24425 and AO356_24430 are separated by 175 nucleotidesAO356_24430 and AO356_24435 are separated by 55 nucleotides AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182 _24415 AO356_24420: AO356_24420 - XRE family transcriptional regulator, at 5,514,206 to 5,515,288 _24420 AO356_24425: AO356_24425 - hypothetical protein, at 5,515,435 to 5,515,923 _24425 AO356_24430: AO356_24430 - lysine transporter LysE, at 5,516,099 to 5,516,686 _24430 AO356_24435: AO356_24435 - AraC family transcriptional regulator, at 5,516,742 to 5,517,566 _24435
Group Condition AO356_24415 AO356_24420 AO356_24425 AO356_24430 AO356_24435
stress copper (II) chloride 2.5 mM -0.7 -0.8 N.D. -0.5 +0.1
phage P5ss-5 phage 10-1 dilution SM calcl2 -0.9 -0.0 N.D. -0.5 -0.2
stress Chlorite 0.04 mM +0.2 -1.1 N.D. -0.6 +0.0
motility outer cut, LB soft agar motility assay -1.1 +0.4 N.D. -0.4 -0.3
pH Minimal media pH6 -0.4 -0.4 N.D. -0.2 -0.2
survival 4C survival; 192 hrs -0.5 -0.2 N.D. -0.7 +0.2
stress Vanillin 1.25 mM -0.3 -0.1 N.D. -0.7 +0.0
pH Minimal media pH8 -0.4 +0.3 N.D. -0.9 -0.1
stress Cholin acetate 40 mM -0.5 -0.2 N.D. +0.0 -0.3
carbon source Fumarate (C) -0.4 -0.4 N.D. +0.1 -0.3
resistance 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine -0.2 -0.2 N.D. -0.5 +0.2
survival 4C survival; 1152 hrs -0.5 +0.1 N.D. +0.0 -0.4
stress methylglyoxal 0.016 vol% +0.1 -0.6 N.D. -0.2 +0.2
carbon source L-Aspartic Acid (C) -0.5 -0.2 N.D. +0.2 +0.1
stress Spectinomycin 0.0125 mg/ml -0.4 -0.3 N.D. +0.3 -0.1
carbon source Fumarate (C) -0.6 +0.3 N.D. +0.1 -0.1
carbon source D-Ribose (C) +0.3 +0.2 N.D. -0.5 -0.1
anaerobic Nitrate reduction with yeast extract +0.5 -0.5 N.D. -0.1 -0.0
motility outer cut, LB soft agar motility assay -0.8 -0.2 N.D. +0.8 +0.2
carbon source acetate (C) +0.6 +0.0 N.D. -0.2 -0.3
carbon source Carbon source Sucrose 10 mM +0.4 -0.5 N.D. +0.3 -0.0
carbon source D-Mannose (C) +0.3 -0.4 N.D. +0.4 -0.2
stress Cholin acetate 20 mM +0.7 -0.3 N.D. +0.1 -0.0
carbon source L-Arginine (C) -0.4 +0.2 N.D. +0.3 +0.3
stress Lomefloxacin 0.0005 mM +0.2 +0.6 N.D. -0.4 +0.1
stress Spectinomycin 0.025 mg/ml -0.4 +0.6 N.D. +0.3 +0.0
stress nitrite 10 mM +0.6 -0.2 N.D. -0.1 +0.2
stress nitrate 200 mM +0.7 +0.4 N.D. -0.3 -0.1
stress Choline chloride 500 mM +0.3 +0.7 N.D. -0.0 -0.1
nitrogen source D-Serine (N) +0.1 +0.6 N.D. +0.3 +0.3
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