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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24245 and AO356_24250 are separated by 42 nucleotides
AO356_24250 and AO356_24255 are separated by 2 nucleotides
AO356_24255 and AO356_24260 overlap by 4 nucleotides
AO356_24260 and AO356_24265 are separated by 96 nucleotides
AO356_24245: AO356_24245 - siderophore-iron reductase FhuF, at 5,440,541 to 5,441,194
_24245
AO356_24250: AO356_24250 - ABC transporter ATP-binding protein, at 5,441,237 to 5,442,883
_24250
AO356_24255: AO356_24255 - non-ribosomal peptide synthetase, at 5,442,886 to 5,446,737
_24255
AO356_24260: AO356_24260 - non-ribosomal peptide synthetase, at 5,446,734 to 5,456,939
_24260
AO356_24265: AO356_24265 - non-ribosomal peptide synthetase, at 5,457,036 to 5,470,982
_24265
Group
Condition
AO356
_24245
AO356
_24250
AO356
_24255
AO356
_24260
AO356
_24265
stress
Chlorite 0.04 mM
-4.5
-2.8
-0.2
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-3.9
-2.5
-0.2
-0.4
-0.2
stress
Chlorite 0.08 mM
-3.1
-2.2
-0.3
-0.5
-0.2
stress
Choline chloride 300 mM
-4.1
-1.6
-0.4
-0.2
-0.2
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-4.2
-1.9
+0.0
+0.2
+0.1
stress
copper (II) chloride 2.5 mM
-4.0
-0.1
+0.1
+0.3
+0.1
temperature
LB 37C
-2.7
-0.3
-0.0
-0.0
-0.0
survival
4C survival; 1152 hrs
-2.5
-0.3
-0.2
+0.1
+0.0
stress
nitrate 200 mM
-2.9
+0.0
+0.0
-0.0
-0.0
pH
Minimal media pH8
-0.6
-1.9
-0.0
-0.1
+0.1
stress
Choline chloride 500 mM
-1.8
-0.4
-0.0
-0.2
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-2.4
+0.3
-0.1
-0.1
+0.1
pH
Minimal media pH9
-1.7
-0.7
+0.0
+0.1
-0.0
stress
Sisomicin 0.001 mg/ml
-1.9
-0.1
-0.3
-0.1
+0.1
stress
Lomefloxacin 0.0005 mM
-1.7
+0.2
-0.4
-0.1
-0.1
carbon source
L-Glutamine (C)
-1.1
-0.8
-0.1
+0.0
-0.1
carbon source
L-Glutamine (C)
-1.0
-0.8
-0.0
-0.0
-0.1
nitrogen source
Putrescine (N)
-0.9
-0.9
-0.2
+0.1
-0.0
survival
4C survival; 192 hrs
-1.9
-0.3
+0.2
+0.1
-0.0
nitrogen source
Uridine (N)
-1.5
-0.2
-0.0
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
-2.0
+0.2
-0.0
-0.0
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-1.4
-0.4
+0.1
+0.1
-0.0
nitrogen source
nitrite (N)
-0.9
-0.9
+0.0
+0.0
+0.1
nitrogen source
Carnitine Hydrochloride (N)
-1.1
-0.7
+0.1
+0.1
+0.0
stress
Rifampicin 0.0024 mg/ml
-1.1
-0.6
+0.1
-0.0
-0.0
stress
perchlorate 75 mM
-1.0
-0.7
+0.3
+0.0
+0.0
carbon source
Putrescine (C)
-1.4
-0.3
+0.1
+0.2
+0.1
resistance
20 mM putrescine
-1.0
-0.4
+0.2
+0.1
-0.1
stress
Spectinomycin 0.025 mg/ml
-1.9
+0.7
+0.4
+0.6
+0.6
nitrogen source
D-Serine (N)
-0.4
+1.2
-0.2
+0.1
+0.0
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