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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24230 and AO356_24235 are separated by 93 nucleotides
AO356_24235 and AO356_24240 are separated by 323 nucleotides
AO356_24240 and AO356_24245 are separated by 235 nucleotides
AO356_24245 and AO356_24250 are separated by 42 nucleotides
AO356_24230: AO356_24230 - hypothetical protein, at 5,435,090 to 5,436,322
_24230
AO356_24235: AO356_24235 - histidine kinase, at 5,436,416 to 5,438,278
_24235
AO356_24240: AO356_24240 - ABC transporter ATP-binding protein, at 5,438,602 to 5,440,305
_24240
AO356_24245: AO356_24245 - siderophore-iron reductase FhuF, at 5,440,541 to 5,441,194
_24245
AO356_24250: AO356_24250 - ABC transporter ATP-binding protein, at 5,441,237 to 5,442,883
_24250
Group
Condition
AO356
_24230
AO356
_24235
AO356
_24240
AO356
_24245
AO356
_24250
stress
Chlorite 0.04 mM
+0.1
-0.1
-3.1
-4.5
-2.8
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.1
+0.1
-3.2
-3.9
-2.5
stress
Chlorite 0.08 mM
-0.1
-0.5
-3.6
-3.1
-2.2
stress
Choline chloride 300 mM
+0.0
-0.1
-2.8
-4.1
-1.6
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.2
-0.2
-0.9
-4.2
-1.9
stress
copper (II) chloride 2.5 mM
+0.1
-0.2
-1.9
-4.0
-0.1
stress
perchlorate 75 mM
-0.1
-0.2
-1.9
-1.0
-0.7
stress
nitrate 200 mM
+0.1
+0.0
-1.0
-2.9
+0.0
stress
Choline chloride 500 mM
-0.0
+0.1
-1.5
-1.8
-0.4
survival
4C survival; 1152 hrs
-0.0
-0.3
-0.3
-2.5
-0.3
temperature
LB 37C
+0.0
-0.1
-0.2
-2.7
-0.3
survival
4C survival; 192 hrs
+0.1
-0.2
-0.5
-1.9
-0.3
nitrogen source
Uridine (N)
-0.0
-0.1
-0.8
-1.5
-0.2
carbon source
Putrescine (C)
-0.0
-0.2
-0.8
-1.4
-0.3
pH
Minimal media pH9
+0.0
-0.0
-0.3
-1.7
-0.7
pH
Minimal media pH8
+0.0
+0.2
-0.3
-0.6
-1.9
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.3
+0.3
-0.9
-2.4
+0.3
nitrogen source
Carnitine Hydrochloride (N)
-0.1
-0.1
-0.5
-1.1
-0.7
stress
Lomefloxacin 0.0005 mM
-0.4
-0.4
-0.2
-1.7
+0.2
carbon source
L-Glutamine (C)
-0.2
+0.1
-0.4
-1.0
-0.8
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.0
-0.4
-1.4
-0.4
nitrogen source
Putrescine (N)
+0.2
-0.0
-0.6
-0.9
-0.9
stress
Sisomicin 0.001 mg/ml
-0.3
+0.1
-0.0
-1.9
-0.1
carbon source
Inosine (C)
-0.0
+0.1
-0.7
-0.9
-0.7
stress
Rifampicin 0.0024 mg/ml
+0.1
+0.1
-0.7
-1.1
-0.6
survival
4C survival; 672 hrs
+0.0
-0.3
-0.5
-1.2
-0.2
carbon source
L-Glutamine (C)
-0.1
+0.1
-0.3
-1.1
-0.8
nitrogen source
nitrite (N)
+0.1
+0.0
-0.5
-0.9
-0.9
motility
outer cut, LB soft agar motility assay
+0.2
+0.2
+0.2
-2.0
+0.2
stress
Spectinomycin 0.025 mg/ml
-0.2
-0.1
+0.8
-1.9
+0.7
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