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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_24125 and AO356_24130 are separated by 136 nucleotides
AO356_24130 and AO356_24135 are separated by 433 nucleotides
AO356_24135 and AO356_24140 are separated by 155 nucleotides
AO356_24140 and AO356_24145 are separated by 398 nucleotides
AO356_24125: AO356_24125 - hypothetical protein, at 5,411,186 to 5,411,479
_24125
AO356_24130: AO356_24130 - NADPH-dependent FMN reductase, at 5,411,616 to 5,412,350
_24130
AO356_24135: AO356_24135 - hypothetical protein, at 5,412,784 to 5,413,722
_24135
AO356_24140: AO356_24140 - hypothetical protein, at 5,413,878 to 5,414,513
_24140
AO356_24145: AO356_24145 - hypothetical protein, at 5,414,912 to 5,415,940
_24145
Group
Condition
AO356
_24125
AO356
_24130
AO356
_24135
AO356
_24140
AO356
_24145
motility
outer cut, LB soft agar motility assay
-1.4
-0.3
+0.0
+0.1
+0.1
carbon source
L-Leucine (C)
-0.8
-0.4
+0.2
-0.4
+0.1
carbon source
Carbon source D-Mannitol 5 mM
-0.1
+0.2
-0.3
-0.2
-0.2
stress
Lomefloxacin 0.0005 mM
+0.4
-0.5
-0.0
-0.4
+0.0
motility
outer cut, LB soft agar motility assay
-0.4
-0.4
+0.2
+0.3
-0.2
stress
Cisplatin 0.0032 mg/ml
-0.7
-0.1
+0.2
-0.1
+0.4
stress
KB-half, Pseudo5 supernatant
-0.3
-0.0
-0.3
+0.4
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.6
-0.1
+0.2
+0.1
+0.1
survival
4C survival; 1152 hrs
-0.2
-0.0
+0.4
-0.4
-0.1
stress
nitrite 10 mM
-0.3
+0.2
-0.2
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
-0.5
-0.0
-0.1
+0.4
+0.2
stress
nitrate 200 mM
-0.3
-0.2
+0.2
+0.1
+0.2
stress
Paraquat dichloride 0.0625 mg/ml
-0.4
-0.1
+0.1
+0.4
+0.2
carbon source
Fumarate (C)
+0.7
-0.3
+0.1
-0.1
-0.1
carbon source
acetate (C)
+0.8
-0.0
-0.1
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
+0.2
-0.5
+0.2
carbon source
D-Lactate (C)
+0.8
-0.1
+0.0
-0.2
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.6
-0.4
+0.1
+0.3
-0.0
stress
Nickel (II) chloride 0.625 mM
+0.5
+0.2
+0.2
-0.4
+0.1
carbon source
D-Fructose (C)
+0.7
-0.0
+0.1
-0.2
-0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.4
-0.0
+0.1
+0.4
-0.3
stress
Cobalt chloride 0.08 mM
+0.4
-0.1
+0.4
-0.1
+0.1
carbon source
D-Glucose (C)
+0.7
+0.0
+0.3
-0.2
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
+0.3
-0.2
+0.3
+0.3
stress
Paraquat dichloride 0.0625 mg/ml
+0.7
-0.0
+0.2
-0.1
+0.1
carbon source
L-Proline (C)
+0.5
-0.1
+0.1
+0.3
+0.1
carbon source
D,L-Lactate (C)
+0.5
+0.1
-0.0
+0.5
-0.0
carbon source
pyruvate (C)
+0.9
+0.0
+0.2
-0.1
-0.0
stress
Cobalt chloride 0.08 mM
+0.9
-0.0
+0.2
+0.3
+0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.7
+0.0
+0.5
+0.2
+0.2
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AO356_24130
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AO356_24135
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