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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_23985 and AO356_23990 are separated by 242 nucleotides
AO356_23990 and AO356_23995 are separated by 55 nucleotides
AO356_23995 and AO356_24000 overlap by 4 nucleotides
AO356_24000 and AO356_24005 overlap by 4 nucleotides
AO356_23985: AO356_23985 - LysR family transcriptional regulator, at 5,377,761 to 5,378,618
_23985
AO356_23990: AO356_23990 - amino acid ABC transporter, at 5,378,861 to 5,379,703
_23990
AO356_23995: AO356_23995 - amino acid ABC transporter, at 5,379,759 to 5,380,610
_23995
AO356_24000: AO356_24000 - hydroxyacid dehydrogenase, at 5,380,607 to 5,382,031
_24000
AO356_24005: AO356_24005 - aspartate aminotransferase, at 5,382,028 to 5,383,239
_24005
Group
Condition
AO356
_23985
AO356
_23990
AO356
_23995
AO356
_24000
AO356
_24005
stress
nitrate 200 mM
+0.2
-3.5
+0.3
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
-0.4
-1.7
+0.4
-0.5
-0.4
anaerobic
Nitrate reduction with yeast extract
-0.1
-0.2
-0.4
-0.6
-0.8
carbon source
Carbon source D-Mannitol 10 mM
-0.2
-1.4
+0.0
+0.0
-0.4
carbon source
succinate (C)
+0.1
-1.3
-0.6
+0.1
-0.0
stress
perchlorate 75 mM
-0.1
-1.5
+0.1
-0.3
+0.2
stress
Chlorite 0.04 mM
+0.1
-0.8
-0.7
-0.1
-0.0
stress
Aluminum chloride 5 mM
-0.2
-1.7
+0.1
+0.2
+0.0
carbon source
succinate (C)
-0.1
-1.3
-0.2
+0.1
+0.2
carbon source
D-Lactate (C)
-0.1
-1.1
-0.5
+0.1
+0.3
carbon source
D,L-Lactate (C)
-0.1
-0.4
-0.5
+0.3
-0.3
carbon source
D-Xylose (C)
+0.1
-0.7
-0.7
+0.2
+0.0
carbon source
Putrescine (C)
+0.5
-0.8
-0.0
+0.2
-0.7
nitrogen source
D-Serine (N)
+0.3
-0.8
+0.2
+0.0
-0.4
temperature
LB 10C
+0.4
-1.0
+0.2
-0.1
+0.0
stress
Cholin acetate 20 mM
-0.1
-0.9
+0.2
+0.2
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.6
-0.2
-0.3
+0.9
temperature
LB 30C
-0.2
+0.8
-0.4
+0.2
-0.3
stress
copper (II) chloride 2.5 mM
+0.4
-1.1
+0.1
-0.1
+0.8
stress
Cisplatin 0.0032 mg/ml
+0.3
-0.5
-0.2
-0.2
+0.7
carbon source
L-Malic (C)
+0.3
+0.6
-0.2
+0.2
-0.4
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+1.0
+0.2
+0.1
-0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
-0.4
+0.7
+0.4
+0.4
motility
outer cut, LB soft agar motility assay
-0.7
+0.7
+0.1
+0.5
+0.6
motility
outer cut, LB soft agar motility assay
-0.3
+1.0
-0.1
+0.5
+0.2
carbon source
L-Arginine (C)
+0.2
+0.9
-0.2
+0.5
-0.0
carbon source
D-Mannose (C)
+0.3
+0.6
+0.2
-0.1
+0.4
survival
4C survival; 1152 hrs
-0.1
+1.2
-0.1
+0.3
+0.2
survival
4C survival; 360 hrs
+0.2
+0.6
+0.4
-0.1
+0.4
stress
KB-half, Pseudo5 supernatant
-0.3
-0.2
+1.2
+0.8
+0.2
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