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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_23935 and AO356_23940 are separated by 130 nucleotides
AO356_23940 and AO356_23945 are separated by 135 nucleotides
AO356_23945 and AO356_23950 are separated by 78 nucleotides
AO356_23950 and AO356_23955 are separated by 308 nucleotides
AO356_23935: AO356_23935 - arginine-ornithine antiporter, at 5,366,840 to 5,368,333
_23935
AO356_23940: AO356_23940 - Crp/Fnr family transcriptional regulator, at 5,368,464 to 5,369,216
_23940
AO356_23945: AO356_23945 - hypothetical protein, at 5,369,352 to 5,369,600
_23945
AO356_23950: AO356_23950 - hypothetical protein, at 5,369,679 to 5,371,022
_23950
AO356_23955: AO356_23955 - GntR family transcriptional regulator, at 5,371,331 to 5,372,062
_23955
Group
Condition
AO356
_23935
AO356
_23940
AO356
_23945
AO356
_23950
AO356
_23955
anaerobic
Nitrate reduction with yeast extract
-0.4
-1.6
-3.3
-0.0
-0.9
carbon source
acetate (C)
-0.2
-0.2
-1.6
+0.0
-0.6
survival
4C survival; 1152 hrs
+0.1
-0.1
-1.7
-0.0
-0.3
survival
4C survival; 672 hrs
-0.2
-0.2
-0.9
-0.1
-0.3
survival
4C survival; 360 hrs
+0.0
-0.2
-1.1
-0.1
-0.4
carbon source
L-Histidine (C)
-0.5
-0.5
-0.3
-0.1
-0.2
carbon source
acetate (C)
-0.2
-0.1
-0.9
+0.1
-0.5
carbon source
L-Histidine (C)
-0.4
-0.4
-0.5
-0.1
-0.1
carbon source
Carbon source D-Mannitol 2.5 mM
+0.2
-0.4
-1.2
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
-0.8
-0.1
-0.5
carbon source
Carbon source D-Glucose 10 mM
+0.4
-0.1
-1.3
+0.1
-0.3
stress
copper (II) chloride 2.5 mM
-0.3
+0.2
-1.1
+0.1
+0.0
stress
Lomefloxacin 0.0005 mM
-0.2
+0.1
-0.9
-0.1
+0.0
carbon source
pyruvate (C)
-0.2
+0.2
-0.8
+0.1
-0.2
stress
Sisomicin 0.001 mg/ml
-0.5
+0.3
-0.4
-0.1
-0.3
carbon source
D-Glucose (C)
-0.2
+0.1
-0.7
+0.3
-0.4
carbon source
Carbon source D-Mannitol 10 mM
+0.5
-0.4
-1.0
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.4
+0.3
-0.5
+0.2
-0.3
lb
LB
-0.2
+0.3
-0.7
-0.1
+0.1
carbon source
Carbon source Sucrose 2.5 mM
+0.5
-0.2
-1.0
+0.2
-0.1
nitrogen source
Urea (N)
+0.3
+0.2
-0.8
-0.2
-0.2
carbon source
Carbon source Sucrose 2.5 mM
+0.5
-0.3
-0.5
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
+0.4
+0.1
-0.4
carbon source
Carbon source D-Mannitol 5 mM
+0.5
-0.4
-0.4
+0.1
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.0
+0.7
-0.1
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
+0.5
-0.3
-0.6
+0.1
-0.0
stress
KB-half, Pseudo5 supernatant
+0.2
+0.3
-0.7
-0.1
+0.3
carbon source
Carbon source D-Glucose 10 mM
+0.7
-0.4
-0.5
+0.1
+0.1
stress
Doxycycline hyclate 0.0001 mg/ml
-0.4
+0.1
+1.4
-0.2
-0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.4
+0.2
+0.9
-0.0
+0.4
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