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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_23800 and AO356_23805 are separated by 63 nucleotides
AO356_23805 and AO356_23810 are separated by 74 nucleotides
AO356_23810 and AO356_23815 are separated by 183 nucleotides
AO356_23815 and AO356_23820 are separated by 245 nucleotides
AO356_23800: AO356_23800 - AraC family transcriptional regulator, at 5,338,382 to 5,339,263
_23800
AO356_23805: AO356_23805 - hypothetical protein, at 5,339,327 to 5,340,268
_23805
AO356_23810: AO356_23810 - LysR family transcriptional regulator, at 5,340,343 to 5,341,197
_23810
AO356_23815: AO356_23815 - amidase, at 5,341,381 to 5,343,087
_23815
AO356_23820: AO356_23820 - thermostable hemolysin, at 5,343,333 to 5,344,010
_23820
Group
Condition
AO356
_23800
AO356
_23805
AO356
_23810
AO356
_23815
AO356
_23820
stress
Lomefloxacin 0.0005 mM
+0.1
-0.1
+0.2
-2.5
-0.3
carbon source
L-Arginine (C)
-0.1
-0.4
+0.0
-1.8
+0.2
carbon source
L-Arginine (C)
-0.0
-0.2
-0.1
-1.4
-0.3
carbon source
L-Lysine (C)
-0.1
-0.5
+0.0
-0.6
-0.6
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.0
-0.9
-0.2
-0.3
-0.3
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.0
-0.2
-1.4
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
+0.1
-0.6
-0.4
-0.2
nitrogen source
L-Phenylalanine (N)
-0.2
-0.3
-0.3
-0.4
-0.4
carbon source
L-Lysine (C)
-0.0
+0.0
+0.1
-1.6
+0.1
nitrogen source
L-Leucine (N)
-0.2
-0.2
-0.3
-0.6
-0.1
survival
4C survival; 360 hrs
-0.2
-0.9
+0.3
-0.8
+0.3
stress
Tetracycline 0.0001 mg/ml
+0.0
-0.2
-0.2
-0.9
-0.1
stress
Aluminum chloride 5 mM
+0.2
+0.0
-0.3
-0.8
-0.4
carbon source
Carbon source D-Mannitol 2.5 mM
+0.1
-0.5
-0.2
-0.6
-0.1
anaerobic
Nitrate reduction with yeast extract
-0.4
-1.5
+0.1
+0.5
+0.1
carbon source
NAG (C)
+0.3
-0.2
-0.0
-0.8
-0.2
stress
copper (II) chloride 2.5 mM
+0.1
-0.5
+0.2
+0.4
-0.8
stress
KB-half, Pseudo5 supernatant
+0.1
+0.6
-0.4
-0.6
-0.1
motility
outer cut, LB soft agar motility assay
+0.6
-0.8
+0.1
+0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.8
+0.2
+0.8
-0.2
stress
perchlorate 75 mM
+0.0
-0.4
-0.3
+1.2
-0.3
stress
nitrite 10 mM
+0.3
+0.4
-0.1
-0.5
+0.1
stress
Sisomicin 0.001 mg/ml
+0.3
-0.3
-0.3
+0.3
+0.2
stress
Cholin acetate 40 mM
-0.2
-0.7
+0.2
+1.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.4
-0.6
+0.2
+0.1
+0.3
stress
Benzalkonium Chloride 0.016 mg/ml
-0.1
-0.0
-0.3
+1.0
-0.0
carbon source
D-Ribose (C)
-0.4
+0.4
-0.0
+0.2
+0.4
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
+0.0
+1.0
-0.1
stress
Cobalt chloride 0.08 mM
+0.0
+0.4
+0.0
+0.9
+0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.0
+0.3
-0.3
+1.6
+0.0
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