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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_23585 and AO356_23590 are separated by 777 nucleotides
AO356_23590 and AO356_23595 are separated by 307 nucleotides
AO356_23595 and AO356_23600 are separated by 60 nucleotides
AO356_23600 and AO356_23605 are separated by 32 nucleotides
AO356_23585: AO356_23585 - hypothetical protein, at 5,289,324 to 5,289,683
_23585
AO356_23590: AO356_23590 - hypothetical protein, at 5,290,461 to 5,294,636
_23590
AO356_23595: AO356_23595 - short-chain dehydrogenase, at 5,294,944 to 5,295,708
_23595
AO356_23600: AO356_23600 - hypothetical protein, at 5,295,769 to 5,296,824
_23600
AO356_23605: AO356_23605 - hypothetical protein, at 5,296,857 to 5,298,674
_23605
Group
Condition
AO356
_23585
AO356
_23590
AO356
_23595
AO356
_23600
AO356
_23605
stress
nitrite 10 mM
+0.0
-0.2
-2.4
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
-0.6
-0.2
-0.6
-0.1
-0.2
stress
Bacitracin 2 mg/ml
-0.2
+0.1
-1.8
+0.2
-0.1
stress
acetate 40 mM
-0.1
+0.1
-1.5
-0.0
-0.1
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
+0.1
-1.6
-0.1
+0.1
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.1
-0.1
-1.0
-0.3
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.6
-0.1
-0.7
-0.0
-0.2
carbon source
D-Ribose (C)
-0.3
-0.1
-0.7
-0.3
-0.3
motility
outer cut, LB soft agar motility assay
+0.3
-0.1
-0.9
-0.6
-0.1
anaerobic
Nitrate reduction with yeast extract
-1.4
-0.0
-0.6
+0.3
+0.3
carbon source
Carbon source Sucrose 10 mM
-0.9
+0.1
-0.6
-0.1
+0.1
carbon source
L-Arabinose (C)
+0.4
-0.1
-1.0
-0.5
-0.2
carbon source
Putrescine (C)
+0.2
+0.0
-0.9
-0.5
-0.0
carbon source
L-Glutamine (C)
+0.4
-0.1
-1.3
+0.0
-0.1
stress
Sisomicin 0.001 mg/ml
-0.2
+0.3
-0.9
+0.1
-0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-1.1
+0.0
+0.6
+0.2
-0.7
stress
Cobalt chloride 0.08 mM
-0.5
-0.2
+0.4
-0.3
-0.2
stress
methylglyoxal 0.016 vol%
+0.4
+0.1
-0.5
-0.4
+0.2
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.3
-0.1
-0.9
+0.4
+0.1
stress
Lomefloxacin 0.0005 mM
+0.1
-0.1
+0.6
-0.2
-0.6
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.5
-0.0
-1.0
+0.3
+0.2
resistance
20 mM putrescine
-0.1
+0.1
-1.0
+0.9
-0.0
carbon source
L-Proline (C)
+0.5
+0.0
-0.7
+0.3
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.6
-0.2
+0.5
-0.6
-0.1
resistance
10% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
+0.4
-0.0
-0.9
+0.6
-0.0
resistance
10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.5
-0.1
-0.6
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
+1.0
+0.1
-1.0
+0.0
+0.2
carbon source
casaminos (C)
+0.3
+0.2
+0.6
-0.5
+0.0
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.3
+0.1
-0.4
+0.7
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.2
+0.3
+0.6
+0.4
-0.2
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