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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_23325 and AO356_23330 are separated by 23 nucleotides
AO356_23330 and AO356_23335 are separated by 195 nucleotides
AO356_23335 and AO356_23340 are separated by 172 nucleotides
AO356_23340 and AO356_23345 are separated by 342 nucleotides
AO356_23325: AO356_23325 - short-chain dehydrogenase, at 5,230,638 to 5,231,405
_23325
AO356_23330: AO356_23330 - aminoglycoside phosphotransferase, at 5,231,429 to 5,232,496
_23330
AO356_23335: AO356_23335 - hypothetical protein, at 5,232,692 to 5,233,087
_23335
AO356_23340: AO356_23340 - chemotaxis protein, at 5,233,260 to 5,235,287
_23340
AO356_23345: AO356_23345 - hypothetical protein, at 5,235,630 to 5,236,736
_23345
Group
Condition
AO356
_23325
AO356
_23330
AO356
_23335
AO356
_23340
AO356
_23345
motility
outer cut, LB soft agar motility assay
-0.6
-0.4
N.D.
-0.3
+0.2
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.8
-0.0
N.D.
-0.1
-0.2
carbon source
pyruvate (C)
-0.9
-0.1
N.D.
-0.1
+0.0
carbon source
D-Glucose (C)
-0.8
-0.1
N.D.
-0.1
-0.0
temperature
LB 20C
-0.8
-0.0
N.D.
-0.1
-0.1
carbon source
L-Arabinose (C)
-0.5
-0.1
N.D.
-0.3
+0.0
temperature
LB 30C
-0.7
-0.1
N.D.
-0.1
+0.0
carbon source
L-Histidine (C)
-0.6
+0.0
N.D.
-0.1
-0.1
temperature
LB 30C
-0.6
-0.2
N.D.
-0.2
+0.1
nitrogen source
Gly-Glu (N)
-0.7
-0.1
N.D.
-0.0
+0.1
pH
Minimal media pH7
-0.8
+0.2
N.D.
-0.1
+0.0
carbon source
D-Galactose (C)
-0.6
-0.2
N.D.
+0.1
-0.1
stress
Cobalt chloride 0.08 mM
-0.6
-0.2
N.D.
+0.1
-0.0
resistance
50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine
-0.5
+0.1
N.D.
-0.1
-0.2
stress
Sisomicin 0.001 mg/ml
+0.2
-0.2
N.D.
-0.5
-0.0
stress
copper (II) chloride 2.5 mM
+0.0
-0.3
N.D.
-0.4
+0.1
nitrogen source
Uridine (N)
+0.3
-0.1
N.D.
-0.2
-0.2
anaerobic
Nitrate reduction with yeast extract
+0.5
-0.2
N.D.
-0.5
+0.1
stress
Chlorite 0.08 mM
-0.4
+0.2
N.D.
+0.1
+0.1
carbon source
D-Trehalose (C)
+0.4
-0.0
N.D.
-0.3
+0.1
nitrogen source
L-Phenylalanine (N)
+0.4
+0.1
N.D.
-0.4
+0.1
stress
KB-half, Pseudo5 supernatant
+0.4
-0.2
N.D.
+0.3
-0.2
stress
perchlorate 75 mM
+0.5
-0.1
N.D.
-0.2
+0.1
stress
Cholin acetate 40 mM
+0.5
-0.1
N.D.
+0.1
-0.1
carbon source
Carbon source Sucrose 10 mM
+0.4
+0.2
N.D.
-0.3
+0.2
carbon source
D-Sorbitol (C)
+0.6
+0.1
N.D.
-0.3
+0.2
stress
Aluminum chloride 5 mM
+0.5
-0.1
N.D.
+0.3
-0.1
carbon source
L-Lysine (C)
+0.6
-0.2
N.D.
+0.1
+0.1
stress
Chlorite 0.04 mM
+0.8
-0.1
N.D.
+0.1
-0.1
carbon source
L-Arginine (C)
+0.7
+0.1
N.D.
+0.1
-0.0
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