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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_23235 and AO356_23240 are separated by 458 nucleotides
AO356_23240 and AO356_23245 are separated by 152 nucleotides
AO356_23245 and AO356_23250 are separated by 138 nucleotides
AO356_23250 and AO356_23255 are separated by 201 nucleotides
AO356_23235: AO356_23235 - hypothetical protein, at 5,201,007 to 5,201,201
_23235
AO356_23240: AO356_23240 - hypothetical protein, at 5,201,660 to 5,202,109
_23240
AO356_23245: AO356_23245 - ABC transporter substrate-binding protein, at 5,202,262 to 5,203,272
_23245
AO356_23250: AO356_23250 - hypothetical protein, at 5,203,411 to 5,203,848
_23250
AO356_23255: AO356_23255 - cation:proton antiporter, at 5,204,050 to 5,204,412
_23255
Group
Condition
AO356
_23235
AO356
_23240
AO356
_23245
AO356
_23250
AO356
_23255
carbon source
L-Histidine (C)
+0.5
-4.1
-0.6
-0.4
N.D.
carbon source
L-Histidine (C)
+0.7
-2.9
-0.9
-0.8
N.D.
anaerobic
Nitrate reduction with yeast extract
+0.2
-3.8
-0.5
+0.4
N.D.
stress
Lomefloxacin 0.0005 mM
-0.1
-1.9
-0.3
-1.0
N.D.
carbon source
Fumarate (C)
+0.4
-1.7
-0.5
-0.3
N.D.
stress
Bacitracin 2 mg/ml
-0.7
-0.7
-0.2
-0.6
N.D.
carbon source
acetate (C)
+0.1
-1.0
-0.4
-0.4
N.D.
stress
Tetracycline 0.0001 mg/ml
-0.1
-0.9
-0.1
-0.6
N.D.
stress
Spectinomycin 0.025 mg/ml
-0.2
-0.6
-0.2
-0.6
N.D.
carbon source
D-Fructose (C)
-0.6
-0.3
+0.1
-0.8
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
+0.5
-1.1
-0.2
-0.7
N.D.
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.3
-0.0
-0.9
N.D.
carbon source
D-Trehalose (C)
-0.3
-0.7
-0.1
-0.3
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.2
-0.7
-0.1
-0.5
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.4
-0.4
-0.2
-0.4
N.D.
lb
LB
-0.5
-0.5
+0.1
-0.5
N.D.
stress
Benzalkonium Chloride 0.016 mg/ml
+0.1
-0.8
-0.0
-0.5
N.D.
survival
4C survival; 672 hrs
-0.8
+0.0
+0.3
-0.6
N.D.
resistance
20 mM putrescine
-0.2
+0.3
+0.2
-1.1
N.D.
carbon source
D-Galactose (C)
+0.2
+0.0
+0.1
-1.2
N.D.
carbon source
Carbon source D-Glucose 10 mM
+0.4
-0.0
-0.1
-0.9
N.D.
carbon source
L-Proline (C)
+0.4
-0.6
+0.1
-0.5
N.D.
stress
acetate 40 mM
-0.2
+0.5
+0.2
-0.7
N.D.
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
-0.3
+0.9
+0.3
-1.1
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+1.4
-0.5
+0.3
-0.5
N.D.
motility
outer cut, LB soft agar motility assay
+0.4
+0.6
+0.2
-0.5
N.D.
carbon source
Putrescine (C)
+0.3
+0.8
+0.3
-0.1
N.D.
survival
4C survival; 1152 hrs
-0.2
+1.0
+0.4
+0.1
N.D.
nitrogen source
Gly-Glu (N)
+0.1
+1.5
+0.4
+0.4
N.D.
stress
Choline chloride 500 mM
+0.3
+1.6
+0.9
-0.4
N.D.
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