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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_22955 and AO356_22960 are separated by 66 nucleotides
AO356_22960 and AO356_22965 are separated by 109 nucleotides
AO356_22965 and AO356_22970 are separated by 83 nucleotides
AO356_22970 and AO356_22975 are separated by 257 nucleotides
AO356_22955: AO356_22955 - ArsR family transcriptional regulator, at 5,124,864 to 5,125,631
_22955
AO356_22960: AO356_22960 - AraC family transcriptional regulator, at 5,125,698 to 5,126,489
_22960
AO356_22965: AO356_22965 - hypothetical protein, at 5,126,599 to 5,127,528
_22965
AO356_22970: AO356_22970 - Branched-chain amino acid aminotransferase (EC 2.6.1.42)
(from data)
, at 5,127,612 to 5,128,631
_22970
AO356_22975: AO356_22975 - Dihydrolipoyl dehydrogenase (EC 1.8.1.4)
(from data)
, at 5,128,889 to 5,130,274
_22975
Group
Condition
AO356
_22955
AO356
_22960
AO356
_22965
AO356
_22970
AO356
_22975
carbon source
L-Isoleucine (C)
+0.2
-0.1
+0.0
-5.7
-6.2
carbon source
L-Leucine (C)
+0.3
-0.1
-0.1
-4.2
-2.5
nitrogen source
L-Leucine (N)
-0.2
-0.0
-0.4
-4.2
-1.0
nitrogen source
L-Isoleucine (N)
-0.2
+0.1
-0.2
-4.1
-1.2
carbon source
L-Lysine (C)
-0.3
-0.1
-0.5
-2.3
-0.6
motility
outer cut, LB soft agar motility assay
-2.0
-0.2
-0.3
-0.3
-0.0
carbon source
L-Lysine (C)
+0.4
-0.3
+0.2
-2.5
-0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
-2.3
+0.0
+0.1
+0.4
-0.5
motility
outer cut, LB soft agar motility assay
-0.2
+0.0
+0.1
-1.0
-0.6
carbon source
acetate (C)
+0.5
-0.1
+0.2
-2.0
-0.1
carbon source
acetate (C)
-0.1
-0.5
-0.1
-1.0
+0.1
stress
Sisomicin 0.001 mg/ml
+0.0
-0.1
+0.1
-1.2
+0.2
nitrogen source
D-Serine (N)
-0.9
-0.2
+0.2
+0.2
-0.2
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.7
-0.4
-0.2
-0.6
-0.2
stress
Lomefloxacin 0.0005 mM
+0.2
-0.6
-0.2
+0.3
-0.2
carbon source
Fumarate (C)
+0.7
-0.2
-0.3
-0.5
-0.0
carbon source
L-Glutamic (C)
+0.8
-0.1
-0.0
-0.5
-0.3
stress
Cephalothin 2 mg/ml
+0.9
-0.3
+0.1
-0.3
-0.3
survival
4C survival; 1152 hrs
+0.7
+0.1
-0.2
+0.1
-0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.5
-0.0
+0.4
-0.8
+0.2
carbon source
D-Gluconic Acid (C)
+0.9
-0.2
+0.1
-0.2
-0.3
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
+0.4
-0.7
+0.3
carbon source
Carbon source Sucrose 10 mM
+0.4
+0.5
-0.2
+0.4
-0.3
stress
nitrite 10 mM
+0.9
+0.1
-0.2
+0.3
+0.1
stress
KB-half, Pseudo5 supernatant
+0.6
-0.0
+0.4
-0.0
+0.5
motility
outer cut, LB soft agar motility assay
+0.9
+0.4
-0.0
-0.0
+0.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.5
+0.5
+0.1
-0.1
+0.5
stress
Chlorite 0.08 mM
+0.9
+0.2
+0.1
+0.4
-0.1
carbon source
Carbon source D-Mannitol 5 mM
+0.6
+0.4
+0.3
+0.2
+0.2
carbon source
Carbon source D-Mannitol 10 mM
+0.6
+0.4
+0.3
+0.3
+0.3
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