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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_22890 and AO356_22895 are separated by 222 nucleotides
AO356_22895 and AO356_22900 are separated by 134 nucleotides
AO356_22900 and AO356_22905 are separated by 429 nucleotides
AO356_22905 and AO356_22910 are separated by 4 nucleotides
AO356_22890: AO356_22890 - hypothetical protein, at 5,109,700 to 5,111,709
_22890
AO356_22895: AO356_22895 - hypothetical protein, at 5,111,932 to 5,114,172
_22895
AO356_22900: AO356_22900 - hypothetical protein, at 5,114,307 to 5,114,795
_22900
AO356_22905: AO356_22905 - transcriptional regulator, at 5,115,225 to 5,115,926
_22905
AO356_22910: AO356_22910 - histidine kinase, at 5,115,931 to 5,117,232
_22910
Group
Condition
AO356
_22890
AO356
_22895
AO356
_22900
AO356
_22905
AO356
_22910
stress
Fusidic 0.1 mg/ml
+0.1
-0.0
-0.2
-1.0
-1.0
stress
Chloramphenicol 0.005 mg/ml
+0.2
+0.0
-0.3
-1.0
-0.7
motility
outer cut, LB soft agar motility assay
-0.0
+0.2
-0.1
-0.9
-0.9
stress
Chlorite 0.08 mM
-0.2
-0.1
-0.2
-1.3
+0.2
stress
Choline chloride 300 mM
+0.0
+0.0
+0.2
-1.1
-0.5
stress
Cholin acetate 40 mM
-0.2
-0.1
+0.1
-0.6
-0.6
nitrogen source
Uridine (N)
-0.3
-0.0
-0.1
-0.3
-0.5
stress
Spectinomycin 0.025 mg/ml
-0.0
+0.0
+0.1
-2.6
+1.3
stress
Sisomicin 0.001 mg/ml
+0.2
-0.0
-0.2
-0.7
-0.4
stress
Cisplatin 0.0032 mg/ml
-0.0
-0.1
+0.2
-1.0
-0.1
stress
Spectinomycin 0.0125 mg/ml
-0.1
+0.0
-0.0
-1.5
+0.6
stress
copper (II) chloride 2.5 mM
+0.3
+0.1
+0.2
-1.0
-0.5
stress
Chlorite 0.04 mM
+0.0
+0.0
+0.0
-1.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-0.0
+0.2
-0.8
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.0
+0.5
-0.4
-0.6
carbon source
L-Histidine (C)
-0.1
-0.1
+0.2
-0.7
+0.3
carbon source
D-Trehalose (C)
-0.1
-0.0
-0.3
-0.5
+0.6
stress
Rifampicin 0.0024 mg/ml
-0.1
+0.1
-0.1
-0.8
+0.6
nitrogen source
Adenosine (N)
-0.1
-0.0
+0.1
-0.7
+0.6
survival
4C survival; 360 hrs
-0.4
-0.0
+0.2
+0.8
-0.7
stress
Nalidixic 0.004 mg/ml
+0.2
+0.0
-0.2
-0.5
+0.5
stress
Choline chloride 500 mM
+0.1
+0.1
+0.1
-0.7
+0.4
stress
Tetracycline 0.0001 mg/ml
+0.0
+0.1
+0.0
-0.5
+0.7
stress
KB-half, Pseudo5 supernatant
-0.2
-0.2
+0.2
+0.2
+0.5
nitrogen source
Inosine (N)
+0.0
-0.0
+0.1
-0.4
+0.9
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
-0.0
+0.4
-0.2
+0.6
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
+0.1
+0.2
-1.0
+1.1
nitrogen source
D-Serine (N)
+0.1
+0.1
+0.4
-1.1
+1.2
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.0
-0.0
-1.6
+2.7
stress
Lomefloxacin 0.0005 mM
-0.4
-0.1
+0.1
-3.5
+6.0
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