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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_22545 and AO356_22550 are separated by 19 nucleotides
AO356_22550 and AO356_22555 are separated by 274 nucleotides
AO356_22555 and AO356_22560 are separated by 2517 nucleotides
AO356_22560 and AO356_22565 are separated by 502 nucleotides
AO356_22545: AO356_22545 - LysR family transcriptional regulator, at 5,038,179 to 5,039,117
_22545
AO356_22550: AO356_22550 - hypothetical protein, at 5,039,137 to 5,039,598
_22550
AO356_22555: AO356_22555 - chloroperoxidase, at 5,039,873 to 5,040,559
_22555
AO356_22560: AO356_22560 - hypothetical protein, at 5,043,077 to 5,043,727
_22560
AO356_22565: AO356_22565 - hypothetical protein, at 5,044,230 to 5,044,502
_22565
Group
Condition
AO356
_22545
AO356
_22550
AO356
_22555
AO356
_22560
AO356
_22565
anaerobic
Nitrate reduction with yeast extract
-0.2
-0.3
-0.2
-0.1
-1.0
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.0
+0.2
-0.3
-1.0
carbon source
D-Sorbitol (C)
+0.1
-0.2
-0.1
-0.0
-1.0
temperature
LB 10C
-0.0
-0.2
-0.1
-0.1
-0.7
stress
Choline chloride 500 mM
-0.2
+0.0
+0.2
-0.0
-1.1
survival
4C survival; 24 hrs
-0.2
-0.1
-0.1
+0.0
-0.7
stress
Chloramphenicol 0.005 mg/ml
-0.0
-0.1
+0.1
-0.1
-0.9
temperature
LB 37C
-0.1
-0.1
-0.1
-0.1
-0.7
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
-0.0
-0.1
-0.0
-0.9
stress
methylglyoxal 0.016 vol%
-0.1
+0.0
+0.1
-0.0
-0.9
pH
Minimal media pH8
+0.0
-0.1
+0.0
+0.0
-0.9
survival
4C survival; 672 hrs
-0.1
-0.1
-0.2
+0.1
-0.6
carbon source
Carbon source D-Mannitol 2.5 mM
-0.1
+0.1
+0.0
+0.0
-0.9
pH
Minimal media pH6
-0.1
-0.1
+0.0
+0.1
-0.7
stress
D-Cycloserine 0.1 mg/ml
+0.0
-0.1
+0.1
+0.0
-0.9
nitrogen source
L-tyrosine (N)
-0.1
-0.1
+0.1
+0.0
-0.6
survival
4C survival; 360 hrs
-0.1
+0.1
+0.1
+0.1
-0.9
stress
Chlorite 0.08 mM
+0.3
-0.2
-0.0
+0.0
-0.7
stress
Bacitracin 2 mg/ml
+0.1
+0.2
+0.1
+0.0
-0.9
stress
Choline chloride 300 mM
+0.0
+0.1
+0.2
+0.1
-0.9
stress
Cobalt chloride 0.08 mM
-0.0
-0.1
-0.0
+0.3
-0.5
lb
LB
-0.0
+0.1
+0.2
+0.1
-0.7
carbon source
D-Glucosamine Hydrochloride (C)
+0.0
-0.2
-0.2
-0.1
+0.7
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
+0.2
+0.2
+0.2
-0.3
nitrogen source
D-Serine (N)
-0.3
+0.0
+0.0
+0.0
+0.6
carbon source
L-Alanine (C)
-0.1
+0.1
-0.1
+0.1
+0.9
carbon source
Carbon source Sucrose 2.5 mM
-0.1
+0.2
-0.0
+0.0
+0.8
stress
Paraquat dichloride 0.0625 mg/ml
+0.0
-0.0
+0.1
-0.1
+0.8
motility
outer cut, LB soft agar motility assay
+0.4
-0.1
+0.0
+0.2
+0.7
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
-0.0
+0.3
+1.5
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AO356_22555
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