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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_22230 and AO356_22235 are separated by 267 nucleotides
AO356_22235 and AO356_22240 are separated by 2 nucleotides
AO356_22240 and AO356_22245 are separated by 139 nucleotides
AO356_22245 and AO356_22250 are separated by 129 nucleotides
AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623
_22230
AO356_22235: AO356_22235 - DNA repair protein, at 4,974,891 to 4,975,226
_22235
AO356_22240: AO356_22240 - hypothetical protein, at 4,975,229 to 4,975,489
_22240
AO356_22245: AO356_22245 - hypothetical protein, at 4,975,629 to 4,975,979
_22245
AO356_22250: AO356_22250 - GCN5 family acetyltransferase, at 4,976,109 to 4,976,537
_22250
Group
Condition
AO356
_22230
AO356
_22235
AO356
_22240
AO356
_22245
AO356
_22250
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
N.D.
-0.4
-0.2
+0.4
-2.6
motility
outer cut, LB soft agar motility assay
N.D.
-0.8
-0.2
-0.1
-0.8
phage
P5ss-5 phage 10-1 dilution SM calcl2
N.D.
-0.4
-0.1
-0.2
-1.0
nitrogen source
D-Serine (N)
N.D.
-0.0
-0.5
-0.4
-0.7
stress
copper (II) chloride 2.5 mM
N.D.
-0.6
-0.5
-0.1
-0.2
stress
Cholin acetate 40 mM
N.D.
-0.7
+0.2
-0.2
-0.5
carbon source
Cytidine (C)
N.D.
-0.3
-0.2
-0.3
-0.4
carbon source
D-Galactose (C)
N.D.
-0.3
-0.2
-0.3
-0.3
stress
Sisomicin 0.001 mg/ml
N.D.
-0.8
+0.4
-0.4
-0.2
stress
Aluminum chloride 5 mM
N.D.
+0.1
+0.0
-1.0
+0.0
motility
outer cut, LB soft agar motility assay
N.D.
-0.3
-0.8
+0.4
-0.1
stress
Cobalt chloride 0.08 mM
N.D.
-0.5
+0.0
+0.1
-0.5
stress
Cobalt chloride 0.08 mM
N.D.
-0.4
+0.3
-0.3
-0.4
stress
1-ethyl-3-methylimidazolium lysine 10 mM
N.D.
-0.3
-0.4
+0.2
-0.2
carbon source
D-Ribose (C)
N.D.
-0.4
+0.2
-0.5
+0.0
carbon source
Carbon source D-Mannitol 10 mM
N.D.
-0.4
-0.1
-0.4
+0.2
carbon source
D-Gluconic Acid (C)
N.D.
-0.4
+0.2
-0.5
+0.0
resistance
10% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
N.D.
+0.1
+0.2
+0.6
-0.9
stress
sodium fluoride 6.25 mM
N.D.
+0.3
+0.3
-0.3
-0.3
anaerobic
Nitrate reduction with yeast extract
N.D.
-0.2
+0.3
-0.3
+0.3
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
N.D.
+0.1
+0.4
+0.3
-0.5
motility
outer cut, LB soft agar motility assay
N.D.
-0.4
+0.0
+0.6
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
N.D.
+0.3
-0.7
+0.4
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
N.D.
-0.2
-0.2
+0.3
+0.4
survival
4C survival; 192 hrs
N.D.
+0.3
+0.3
-0.3
+0.1
stress
Benzethonium chloride 0.025 mM
N.D.
+0.2
+0.5
+0.1
-0.3
stress
KB-half, Pseudo5 supernatant
N.D.
+0.2
-0.4
+0.5
+0.6
stress
nitrate 200 mM
N.D.
-0.1
+0.5
+0.3
+0.4
stress
D-Cycloserine 0.1 mg/ml
N.D.
+0.1
+0.4
+0.4
+0.2
stress
nitrite 10 mM
N.D.
+0.1
+1.0
-0.0
+0.3
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