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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_22075 and AO356_22080 are separated by 108 nucleotides
AO356_22080 and AO356_22085 are separated by 456 nucleotides
AO356_22085 and AO356_22090 are separated by 242 nucleotides
AO356_22090 and AO356_22095 overlap by 8 nucleotides
AO356_22075: AO356_22075 - chemotaxis protein, at 4,940,762 to 4,942,684
_22075
AO356_22080: AO356_22080 - isocitrate lyase, at 4,942,793 to 4,944,118
_22080
AO356_22085: AO356_22085 - secretin, at 4,944,575 to 4,945,336
_22085
AO356_22090: AO356_22090 - GNAT family acetyltransferase, at 4,945,579 to 4,946,004
_22090
AO356_22095: AO356_22095 - cupin, at 4,945,997 to 4,947,163
_22095
Group
Condition
AO356
_22075
AO356
_22080
AO356
_22085
AO356
_22090
AO356
_22095
carbon source
L-Leucine (C)
-0.1
-5.6
+0.2
-0.2
-0.2
carbon source
Tween 20 (C)
+0.1
-5.7
-0.2
+0.1
-0.3
carbon source
acetate (C)
-0.2
-5.6
+0.3
+0.1
-0.5
carbon source
acetate (C)
-0.2
-5.0
+0.4
+0.6
-0.4
carbon source
Carnitine Hydrochloride (C)
-0.1
-4.3
-0.1
-0.1
+0.1
carbon source
Ethanol (C)
+0.3
-4.8
+0.0
-0.1
+0.1
carbon source
Tween 20 (C)
+0.2
-4.7
+0.0
+0.2
+0.2
carbon source
L-Isoleucine (C)
-0.3
-2.9
+0.1
-0.2
-0.2
carbon source
Ethanol (C)
+0.3
-3.9
+0.1
+0.2
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
-0.5
-2.0
-0.8
temperature
LB 20C
+0.1
-0.1
-0.2
-0.4
-2.2
survival
4C survival; 360 hrs
+0.1
+0.2
-0.2
+0.2
-2.9
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.0
+0.0
-0.2
-0.8
-1.8
survival
4C survival; 192 hrs
+0.0
+0.1
-0.1
-0.1
-2.5
carbon source
NAG (C)
-0.1
-1.8
-0.0
+0.2
-0.8
motility
outer cut, LB soft agar motility assay
-0.0
-0.0
+0.4
-1.3
-1.5
carbon source
L-Lysine (C)
+0.2
-4.3
-0.1
-1.0
+2.7
temperature
LB 10C
-0.1
-0.1
-0.1
+0.2
-2.3
carbon source
Carbon source Sucrose 5 mM
-0.0
-0.3
+0.2
-0.4
-1.8
temperature
LB 20C
+0.0
+0.0
+0.1
-0.5
-1.9
temperature
LB 10C
+0.0
+0.1
-0.1
-0.2
-2.1
survival
4C survival; 1152 hrs
+0.0
+0.1
+0.2
+0.2
-2.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.5
-0.1
+0.3
-1.2
anaerobic
Nitrate reduction with yeast extract
+0.1
+0.3
-0.5
-1.0
-0.5
carbon source
L-Lysine (C)
+0.0
-4.6
+0.2
+0.1
+2.9
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.3
+0.1
-0.3
-0.5
+1.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
-0.1
-0.0
+0.7
+1.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
-0.1
+0.2
+0.5
+1.4
stress
Sisomicin 0.001 mg/ml
+1.0
+0.8
+0.2
-0.4
+0.9
stress
Lomefloxacin 0.0005 mM
-0.1
-0.0
+0.3
+0.1
+6.4
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