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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_21905 and AO356_21910 are separated by 35 nucleotides
AO356_21910 and AO356_21915 are separated by 36 nucleotides
AO356_21915 and AO356_21920 are separated by 292 nucleotides
AO356_21920 and AO356_21925 are separated by 86 nucleotides
AO356_21905: AO356_21905 - monooxygenase, at 4,901,091 to 4,902,419
_21905
AO356_21910: AO356_21910 - phosphate ABC transporter substrate-binding protein, at 4,902,455 to 4,903,237
_21910
AO356_21915: AO356_21915 - chemotaxis protein, at 4,903,274 to 4,905,217
_21915
AO356_21920: AO356_21920 - AraC family transcriptional regulator, at 4,905,510 to 4,906,553
_21920
AO356_21925: AO356_21925 - hypothetical protein, at 4,906,640 to 4,907,053
_21925
Group
Condition
AO356
_21905
AO356
_21910
AO356
_21915
AO356
_21920
AO356
_21925
stress
Doxycycline hyclate 0.0001 mg/ml
+0.4
-0.1
-0.0
-0.4
-1.6
stress
methylglyoxal 0.016 vol%
+0.0
+0.1
-0.3
-0.3
-0.8
stress
Rifampicin 0.0016 mg/ml
-0.1
-0.1
-0.1
-0.2
-0.7
stress
Rifampicin 0.0024 mg/ml
-0.0
-0.0
-0.0
-0.1
-1.0
stress
Tetracycline 0.0001 mg/ml
+0.1
-0.0
-0.1
-0.3
-0.8
stress
Nalidixic 0.004 mg/ml
+0.2
-0.0
-0.2
-0.1
-0.8
stress
Lomefloxacin 0.0005 mM
+0.2
+0.2
-0.0
-0.1
-1.1
stress
Fusidic 0.1 mg/ml
-0.0
+0.0
-0.2
+0.1
-0.7
carbon source
Carnitine Hydrochloride (C)
+0.2
+0.0
-0.1
-0.6
-0.3
stress
syringaldehyde 10 mM
-0.1
-0.1
-0.2
+0.1
-0.5
carbon source
L-Lysine (C)
-0.1
-0.2
+0.1
-0.3
-0.2
carbon source
D-Lactate (C)
+0.0
+0.1
-0.0
+0.0
-0.7
carbon source
D-Xylose (C)
+0.0
+0.1
-0.1
-0.1
-0.6
stress
Spectinomycin 0.025 mg/ml
+0.1
-0.2
+0.1
-0.2
-0.4
carbon source
acetate (C)
+0.1
+0.2
-0.1
+0.1
-0.8
pH
Minimal media pH6
+0.1
-0.1
-0.0
+0.1
-0.6
anaerobic
Nitrate reduction with yeast extract
-0.2
+0.0
-0.2
+0.2
-0.3
stress
Sisomicin 0.001 mg/ml
+0.2
+0.1
+0.0
-0.2
-0.6
carbon source
acetate (C)
+0.0
+0.1
-0.1
+0.2
-0.6
stress
copper (II) chloride 2.5 mM
-0.3
+0.1
-0.3
+0.2
-0.0
nitrogen source
Gly-Glu (N)
+0.2
+0.1
-0.2
-0.1
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.1
+0.0
-0.1
+0.2
-0.4
stress
Nickel (II) chloride 0.625 mM
+0.0
+0.2
-0.1
+0.3
-0.4
stress
Choline chloride 500 mM
-0.0
-0.1
+0.2
+0.3
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
+0.1
+0.2
-0.3
carbon source
L-Histidine (C)
+0.2
-0.2
+0.2
-0.2
+0.1
survival
4C survival; 672 hrs
+0.1
-0.1
-0.2
-0.1
+0.8
nitrogen source
Urea (N)
+0.5
+0.1
+0.1
+0.1
+0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
-0.1
+0.0
+0.1
+1.3
survival
4C survival; 1152 hrs
+0.0
-0.2
-0.1
+0.2
+2.5
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