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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_21845 and AO356_21850 overlap by 1 nucleotides
AO356_21850 and AO356_21855 are separated by 202 nucleotides
AO356_21855 and AO356_21860 are separated by 182 nucleotides
AO356_21860 and AO356_21865 are separated by 42 nucleotides
AO356_21845: AO356_21845 - electron transporter RnfB, at 4,891,540 to 4,892,289
_21845
AO356_21850: AO356_21850 - electron transfer flavoprotein subunit beta, at 4,892,289 to 4,893,224
_21850
AO356_21855: AO356_21855 - glycine/betaine ABC transporter substrate-binding protein, at 4,893,427 to 4,894,326
_21855
AO356_21860: AO356_21860 - transcriptional regulator, at 4,894,509 to 4,895,153
_21860
AO356_21865: AO356_21865 - hypothetical protein, at 4,895,196 to 4,895,462
_21865
Group
Condition
AO356
_21845
AO356
_21850
AO356
_21855
AO356
_21860
AO356
_21865
stress
methylglyoxal 0.016 vol%
-0.5
-0.3
-0.1
-0.3
-0.8
anaerobic
Nitrate reduction with yeast extract
+0.5
-0.9
+0.2
+0.4
-1.7
carbon source
D-Fructose (C)
-0.3
-0.1
-0.2
+0.1
-0.7
stress
copper (II) chloride 2.5 mM
-0.5
+0.3
+0.3
-0.3
-0.8
carbon source
Ethanol (C)
-0.3
-0.2
+0.2
-0.1
-0.4
carbon source
L-Glutamine (C)
-0.2
-0.2
+0.1
+0.1
-0.5
stress
Lomefloxacin 0.0005 mM
-0.4
+0.2
+0.0
+0.1
-0.6
temperature
LB 20C
+0.3
+0.2
-0.2
-0.2
-0.7
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.2
+0.1
-0.1
-0.4
-0.4
carbon source
Carbon source D-Mannitol 5 mM
+0.0
-0.3
+0.3
-0.2
-0.6
carbon source
pyruvate (C)
-0.3
-0.0
-0.1
+0.2
-0.4
carbon source
Ethanol (C)
-0.1
-0.1
+0.2
+0.2
-0.8
nitrogen source
Urea (N)
-0.4
-0.3
-0.1
-0.1
+0.3
carbon source
Carbon source D-Mannitol 10 mM
-0.0
+0.2
+0.1
-0.2
-0.6
carbon source
D-Alanine (C)
-0.2
+0.1
-0.4
-0.3
+0.3
carbon source
L-Lysine (C)
+0.1
-0.1
+0.2
+0.2
-0.8
carbon source
Tween 20 (C)
+0.1
-0.4
+0.2
+0.1
-0.3
stress
Benzalkonium Chloride 0.016 mg/ml
-0.0
+0.2
-0.5
-0.4
+0.5
carbon source
L-Leucine (C)
-0.1
-0.4
-0.2
+0.1
+0.5
motility
outer cut, LB soft agar motility assay
+0.4
+0.4
-0.2
-0.4
-0.3
carbon source
L-Arginine (C)
-0.0
+0.2
+0.4
-0.0
-0.4
stress
Nalidixic 0.004 mg/ml
-0.0
+0.3
-0.3
-0.0
+0.5
carbon source
L-Asparagine (C)
+0.1
+0.2
+0.4
+0.2
-0.4
stress
nitrate 200 mM
-0.1
+0.2
-0.2
+0.3
+0.3
nitrogen source
L-tyrosine (N)
+0.1
-0.1
-0.1
+0.3
+0.5
nitrogen source
L-Phenylalanine (N)
+0.3
+0.3
-0.3
+0.1
+0.4
nitrogen source
D-Alanine (N)
+0.1
+0.2
-0.1
+0.2
+0.7
motility
outer cut, LB soft agar motility assay
+0.1
+0.0
+0.3
+0.1
+0.6
stress
KB-half, Pseudo5 supernatant
+0.7
+0.1
+0.1
-0.2
+0.5
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
+0.1
+0.1
-0.6
+1.0
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