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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_21785 and AO356_21790 overlap by 1 nucleotides
AO356_21790 and AO356_21795 overlap by 4 nucleotides
AO356_21795 and AO356_21800 overlap by 4 nucleotides
AO356_21800 and AO356_21805 are separated by 214 nucleotides
AO356_21785: AO356_21785 - ABC transporter permease, at 4,876,766 to 4,877,548
_21785
AO356_21790: AO356_21790 - sulfonate ABC transporter ATP-binding protein, at 4,877,548 to 4,878,396
_21790
AO356_21795: AO356_21795 - PBS lyase, at 4,878,393 to 4,879,355
_21795
AO356_21800: AO356_21800 - hypothetical protein, at 4,879,352 to 4,879,639
_21800
AO356_21805: AO356_21805 - LexA family transcriptional regulator, at 4,879,854 to 4,880,471
_21805
Group
Condition
AO356
_21785
AO356
_21790
AO356
_21795
AO356
_21800
AO356
_21805
stress
Paraquat dichloride 0.0625 mg/ml
-0.4
-0.9
-1.2
N.D.
-0.3
stress
Doxycycline hyclate 0.0001 mg/ml
-0.5
-0.8
-1.3
N.D.
+0.1
stress
copper (II) chloride 2.5 mM
-0.1
-1.3
-1.0
N.D.
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.4
-1.2
N.D.
-0.4
stress
Choline chloride 300 mM
-0.1
-0.4
-1.3
N.D.
-0.3
lb
LB
-0.2
-0.7
-1.1
N.D.
+0.1
pH
Minimal media pH8
+0.1
-0.0
-1.7
N.D.
-0.2
stress
1-ethyl-3-methylimidazolium acetate 10 mM
-0.5
-0.5
-0.7
N.D.
+0.0
stress
methylglyoxal 0.016 vol%
+0.3
-1.0
-0.8
N.D.
-0.3
stress
Vanillin 1.25 mM
+0.3
-0.6
-1.0
N.D.
-0.2
carbon source
D-Ribose (C)
-0.2
-0.4
-1.2
N.D.
+0.3
temperature
LB 37C
-0.1
-0.3
-1.2
N.D.
+0.1
stress
Lomefloxacin 0.0005 mM
-0.1
-0.7
-0.9
N.D.
+0.4
stress
Cephalothin 2 mg/ml
-0.3
+0.2
-0.9
N.D.
-0.4
motility
outer cut, LB soft agar motility assay
-0.6
-1.2
+1.1
N.D.
-0.5
carbon source
L-Lactate (C)
-0.2
-1.9
+0.6
N.D.
+0.4
motility
outer cut, LB soft agar motility assay
-0.0
-0.5
-0.9
N.D.
+0.3
carbon source
NAG (C)
-0.0
-0.4
-1.0
N.D.
+0.3
stress
Cholin acetate 20 mM
-0.1
+0.7
-0.7
N.D.
-0.8
survival
4C survival; 24 hrs
-0.4
+0.2
-1.2
N.D.
+0.6
carbon source
Carbon source D-Mannitol 2.5 mM
+0.5
+0.6
-2.2
N.D.
+0.5
temperature
LB 30C
-0.0
+0.6
-0.5
N.D.
-0.7
anaerobic
Nitrate reduction with yeast extract
+0.5
-1.7
+1.0
N.D.
-0.1
carbon source
Fumarate (C)
-0.4
-0.7
+0.6
N.D.
+0.4
carbon source
Carbon source Sucrose 5 mM
+0.4
-0.7
+0.7
N.D.
-0.3
carbon source
acetate (C)
-0.3
-0.5
+0.8
N.D.
+0.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
+1.0
-0.7
N.D.
+0.0
stress
nitrate 200 mM
-0.2
+0.8
+0.8
N.D.
-0.4
stress
KB-half, Pseudo5 supernatant
+0.5
+1.5
-0.5
N.D.
+0.0
carbon source
Carbon source Sucrose 10 mM
+0.3
+1.5
-0.1
N.D.
-0.1
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