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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO356_21750 and AO356_21755 are separated by 206 nucleotides
AO356_21755 and AO356_21760 are separated by 89 nucleotides
AO356_21760 and AO356_21765 are separated by 105 nucleotides
AO356_21765 and AO356_21770 overlap by 8 nucleotides
AO356_21750: AO356_21750 - hypothetical protein, at 4,868,889 to 4,869,833
_21750
AO356_21755: AO356_21755 - AraC family transcriptional regulator, at 4,870,040 to 4,871,077
_21755
AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138
_21760
AO356_21765: AO356_21765 - GntR family transcriptional regulator, at 4,872,244 to 4,873,002
_21765
AO356_21770: AO356_21770 - oxidoreductase, at 4,872,995 to 4,874,725
_21770
Group
Condition
AO356
_21750
AO356
_21755
AO356
_21760
AO356
_21765
AO356
_21770
anaerobic
Nitrate reduction with yeast extract
+0.3
+0.2
-0.2
-2.6
-0.0
stress
copper (II) chloride 2.5 mM
+0.1
+0.8
+0.1
-2.8
+0.2
carbon source
Tween 20 (C)
+0.0
-0.3
-0.0
-1.2
+0.0
nitrogen source
Urea (N)
-0.2
+0.0
-0.0
-1.2
-0.0
carbon source
Carbon source D-Mannitol 10 mM
-0.0
-0.1
+0.1
-1.2
-0.0
carbon source
L-Malic (C)
+0.0
-0.1
-0.0
-1.2
-0.0
carbon source
L-Asparagine (C)
-0.0
-0.4
-0.1
-0.7
+0.0
stress
Paraquat dichloride 0.0625 mg/ml
-0.1
-0.0
-0.2
-0.8
+0.0
carbon source
L-Histidine (C)
+0.1
-0.2
-0.1
-0.7
-0.1
carbon source
L-Lysine (C)
-0.2
+0.1
+0.2
-1.3
+0.1
stress
nitrate 200 mM
-0.1
-0.2
+0.2
-0.7
-0.2
pH
Minimal media pH9
+0.1
-0.2
-0.1
-0.8
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.2
+0.0
-0.9
+0.1
carbon source
Carbon source D-Glucose 10 mM
-0.1
-0.6
+0.2
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.0
+0.0
+0.2
-0.9
-0.2
stress
KB-half, Pseudo5 supernatant
-0.1
+0.3
+0.3
-0.8
-0.1
stress
Sisomicin 0.001 mg/ml
+0.1
+0.7
+0.1
-1.1
+0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.1
+0.2
+0.3
-0.5
+0.1
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.1
-0.2
+1.0
+0.0
motility
outer cut, LB soft agar motility assay
+0.0
-0.2
-0.2
+1.1
-0.2
stress
Cephalothin 2 mg/ml
+0.1
-0.3
+0.2
+0.5
+0.1
nitrogen source
nitrite (N)
-0.0
-0.2
-0.1
+1.0
-0.0
lb
LB
+0.1
-0.3
+0.0
+1.0
-0.2
stress
methylglyoxal 0.016 vol%
-0.2
+0.0
+0.1
+0.9
+0.0
carbon source
D-Xylose (C)
-0.1
+0.4
-0.1
+0.6
+0.2
lb
LB
+0.1
-0.1
-0.1
+1.0
+0.1
stress
Spectinomycin 0.025 mg/ml
-0.0
+0.2
+0.0
+1.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.1
-0.5
+0.3
+1.5
+0.0
stress
Vanillin 1.25 mM
-0.0
+0.0
-0.0
+1.3
-0.1
stress
D-Cycloserine 0.1 mg/ml
+0.1
+0.2
+0.1
+0.8
+0.1
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