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Gene
Fitness
Nearby
Cofit
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_20980 and AO356_20985 are separated by 670 nucleotides
AO356_20985 and AO356_20990 are separated by 72 nucleotides
AO356_20990 and AO356_20995 are separated by 30 nucleotides
AO356_20995 and AO356_21000 are separated by 238 nucleotides
AO356_20980: AO356_20980 - transporter, at 4,669,127 to 4,670,017
_20980
AO356_20985: AO356_20985 - 16S ribosomal RNA, at 4,670,688 to 4,672,233
_20985
AO356_20990: AO356_20990 - tRNA-Ile, at 4,672,306 to 4,672,382
_20990
AO356_20995: AO356_20995 - tRNA-Ala, at 4,672,413 to 4,672,488
_20995
AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642
_21000
Group
Condition
AO356
_20980
AO356
_20985
AO356
_20990
AO356
_20995
AO356
_21000
carbon source
L-Histidine (C)
-0.6
N.D.
N.D.
N.D.
N.D.
carbon source
L-Histidine (C)
-0.5
N.D.
N.D.
N.D.
N.D.
stress
KB-half, Pseudo5 supernatant
-0.3
N.D.
N.D.
N.D.
N.D.
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.3
N.D.
N.D.
N.D.
N.D.
stress
Lomefloxacin 0.0005 mM
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Ribose (C)
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
N.D.
N.D.
N.D.
N.D.
carbon source
D-Xylose (C)
-0.2
N.D.
N.D.
N.D.
N.D.
stress
syringaldehyde 10 mM
-0.2
N.D.
N.D.
N.D.
N.D.
nitrogen source
D-Serine (N)
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Sisomicin 0.001 mg/ml
-0.2
N.D.
N.D.
N.D.
N.D.
stress
Nickel (II) chloride 0.625 mM
-0.2
N.D.
N.D.
N.D.
N.D.
stress
sodium fluoride 6.25 mM
-0.1
N.D.
N.D.
N.D.
N.D.
pH
Minimal media pH8
-0.1
N.D.
N.D.
N.D.
N.D.
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
-0.1
N.D.
N.D.
N.D.
N.D.
pH
Minimal media pH7
-0.1
N.D.
N.D.
N.D.
N.D.
carbon source
D-Sorbitol (C)
+0.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Lysine (C)
+0.1
N.D.
N.D.
N.D.
N.D.
carbon source
L-Malic (C)
+0.1
N.D.
N.D.
N.D.
N.D.
stress
Cephalothin 2 mg/ml
+0.1
N.D.
N.D.
N.D.
N.D.
carbon source
Tween 20 (C)
+0.1
N.D.
N.D.
N.D.
N.D.
stress
Cisplatin 0.0032 mg/ml
+0.1
N.D.
N.D.
N.D.
N.D.
carbon source
Carbon source Sucrose 10 mM
+0.1
N.D.
N.D.
N.D.
N.D.
stress
Chloramphenicol 0.005 mg/ml
+0.2
N.D.
N.D.
N.D.
N.D.
stress
Paraquat dichloride 0.0625 mg/ml
+0.2
N.D.
N.D.
N.D.
N.D.
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
N.D.
N.D.
N.D.
N.D.
stress
Fusidic 0.1 mg/ml
+0.2
N.D.
N.D.
N.D.
N.D.
motility
outer cut, LB soft agar motility assay
+0.2
N.D.
N.D.
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
+0.2
N.D.
N.D.
N.D.
N.D.
stress
copper (II) chloride 2.5 mM
+0.3
N.D.
N.D.
N.D.
N.D.
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