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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_20875 and AO356_20880 are separated by 52 nucleotides
AO356_20880 and AO356_20885 are separated by 381 nucleotides
AO356_20885 and AO356_20890 are separated by 0 nucleotides
AO356_20890 and AO356_20895 overlap by 1 nucleotides
AO356_20875: AO356_20875 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 4,650,295 to 4,652,886
_20875
AO356_20880: AO356_20880 - 3-methylitaconate isomerase, at 4,652,939 to 4,654,132
_20880
AO356_20885: AO356_20885 - metal ABC transporter substrate-binding protein, at 4,654,514 to 4,655,407
_20885
AO356_20890: AO356_20890 - zinc ABC transporter permease, at 4,655,408 to 4,656,307
_20890
AO356_20895: AO356_20895 - manganese ABC transporter ATP-binding protein, at 4,656,307 to 4,657,059
_20895
Group
Condition
AO356
_20875
AO356
_20880
AO356
_20885
AO356
_20890
AO356
_20895
carbon source
L-Isoleucine (C)
-4.1
-5.6
-0.1
-0.1
+0.6
nitrogen source
L-Isoleucine (N)
-3.1
-5.6
+0.0
-0.0
-0.6
stress
nitrate 200 mM
+0.1
+1.0
-3.3
-2.1
-1.9
survival
4C survival; 1152 hrs
-1.9
-3.1
-0.5
-0.4
-0.0
stress
perchlorate 75 mM
-0.2
-0.1
-2.1
-2.4
-1.0
carbon source
L-Leucine (C)
-3.0
-2.1
-0.0
-0.2
-0.1
survival
4C survival; 360 hrs
-2.3
-2.5
+0.4
-0.2
-0.7
carbon source
L-Histidine (C)
-1.8
-2.2
+0.0
-0.3
-0.5
carbon source
NAG (C)
-2.0
-2.1
+0.1
-0.1
-0.3
survival
4C survival; 672 hrs
-1.9
-2.0
-0.2
-0.2
-0.1
temperature
LB 20C
-1.3
-2.1
-0.5
-0.0
-0.2
survival
4C survival; 192 hrs
-1.9
-1.7
-0.3
-0.3
+0.3
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
-0.3
-2.1
-1.0
-0.6
stress
nitrite 10 mM
-0.7
-1.4
-1.0
-0.4
-0.2
motility
outer cut, LB soft agar motility assay
-0.9
-0.3
-0.8
-0.2
-1.3
stress
Choline chloride 300 mM
-0.4
-0.7
-0.8
-0.9
-0.6
carbon source
L-Glutamine (C)
-0.6
-3.1
+0.2
-0.0
+0.3
stress
Chlorite 0.04 mM
-0.5
-1.1
-0.9
-0.7
+0.2
temperature
LB 30C
-1.1
-2.0
+0.0
+0.4
-0.2
carbon source
L-Histidine (C)
-1.7
-1.1
-0.1
+0.1
+0.0
temperature
LB 20C
-1.1
-1.5
+0.1
+0.3
-0.4
carbon source
L-Lysine (C)
-1.9
-0.7
+0.3
-0.2
-0.0
stress
syringaldehyde 10 mM
-0.9
-0.9
-0.5
-0.3
+0.5
carbon source
L-Arabinose (C)
-1.1
-1.3
+0.1
-0.1
+0.3
carbon source
D-Lactate (C)
-1.2
-1.6
+0.3
-0.2
+0.5
stress
Sisomicin 0.001 mg/ml
-0.3
-1.9
+0.3
+0.3
-0.6
stress
acetate 40 mM
-0.4
-1.6
+0.6
-0.3
-0.3
temperature
LB 30C
-1.1
-1.3
+0.3
+0.2
+0.1
nitrogen source
Thymine (N)
-1.8
-0.3
+0.3
-0.1
+0.4
stress
KB-half, Pseudo5 supernatant
+0.1
+1.4
+1.1
-0.3
-0.0
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