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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_20765 and AO356_20770 are separated by 144 nucleotides
AO356_20770 and AO356_20775 are separated by 128 nucleotides
AO356_20775 and AO356_20780 are separated by 400 nucleotides
AO356_20780 and AO356_20785 are separated by 156 nucleotides
AO356_20765: AO356_20765 - phytanoyl-CoA dioxygenase, at 4,628,342 to 4,629,019
_20765
AO356_20770: AO356_20770 - hypothetical protein, at 4,629,164 to 4,629,787
_20770
AO356_20775: AO356_20775 - short-chain dehydrogenase, at 4,629,916 to 4,630,194
_20775
AO356_20780: AO356_20780 - diguanylate cyclase, at 4,630,595 to 4,632,784
_20780
AO356_20785: AO356_20785 - hypothetical protein, at 4,632,941 to 4,633,126
_20785
Group
Condition
AO356
_20765
AO356
_20770
AO356
_20775
AO356
_20780
AO356
_20785
motility
outer cut, LB soft agar motility assay
-0.4
+0.4
-0.5
+0.5
-2.4
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.2
-0.3
+0.3
-0.2
-2.3
nitrogen source
L-Phenylalanine (N)
+0.1
-0.2
-0.2
-0.0
-1.7
carbon source
Fumarate (C)
+0.1
-0.0
-0.5
+0.1
-1.3
carbon source
D-Trehalose (C)
-0.1
-0.0
+0.0
-0.0
-1.4
carbon source
L-Lysine (C)
-0.3
+0.0
+0.1
-0.1
-1.2
stress
Nalidixic 0.004 mg/ml
-0.7
+0.1
+0.0
+0.2
-1.1
carbon source
L-Arabinose (C)
+0.2
+0.0
+0.1
+0.1
-1.9
carbon source
D-Galactose (C)
-0.0
-0.1
-0.3
+0.1
-1.0
nitrogen source
Carnitine Hydrochloride (N)
-0.2
-0.0
+0.1
-0.1
-1.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.1
-0.1
-0.2
+0.3
-1.1
carbon source
D-Lactate (C)
-0.0
+0.2
-0.5
-0.0
-0.8
carbon source
Carbon source D,L-Lactate 10 mM
+0.2
+0.2
-0.3
-0.1
-1.1
carbon source
Carbon source D-Mannitol 5 mM
-0.1
-0.0
+0.4
-0.1
-1.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.4
+0.1
-0.8
-0.2
+0.5
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
+0.2
-0.2
+0.1
-1.2
survival
4C survival; 192 hrs
+0.3
-0.1
+0.1
+0.0
-1.0
carbon source
Carbon source Sucrose 5 mM
+0.3
-0.0
+0.2
+0.0
-1.1
stress
KB-half, Pseudo5 supernatant
-0.6
+0.1
-0.2
-0.2
+0.4
stress
Sisomicin 0.001 mg/ml
+0.1
+0.1
+0.7
-0.0
-1.3
carbon source
Carbon source Sucrose 2.5 mM
+0.2
-0.0
+0.5
+0.1
-1.2
anaerobic
Nitrate reduction with yeast extract
+0.5
-0.1
+0.9
-0.2
-0.5
stress
Nickel (II) chloride 0.625 mM
+0.3
+0.3
-0.5
+0.1
+0.3
stress
Rifampicin 0.0016 mg/ml
+0.1
+0.2
+0.6
+0.2
-0.5
nitrogen source
D-Serine (N)
-0.1
-0.0
-0.3
+0.1
+0.9
stress
syringaldehyde 5 mM
-0.1
-0.3
-0.3
+0.8
+0.6
stress
Lomefloxacin 0.0005 mM
-0.6
+0.2
+0.1
+0.2
+1.3
stress
Cholin acetate 20 mM
-0.2
+0.1
+0.6
+0.1
+0.8
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.1
-0.0
+0.6
+0.0
+0.7
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
-0.2
+0.3
+0.9
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