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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_20670 and AO356_20675 are separated by 95 nucleotides
AO356_20675 and AO356_20680 are separated by 261 nucleotides
AO356_20680 and AO356_20685 overlap by 4 nucleotides
AO356_20685 and AO356_20690 are separated by 69 nucleotides
AO356_20670: AO356_20670 - 3-oxoacyl-ACP reductase, at 4,612,084 to 4,612,842
_20670
AO356_20675: AO356_20675 - dihydrofolate reductase, at 4,612,938 to 4,613,894
_20675
AO356_20680: AO356_20680 - toxin-antitoxin toxin family protein, at 4,614,156 to 4,614,488
_20680
AO356_20685: AO356_20685 - XRE family transcriptional regulator, at 4,614,485 to 4,615,123
_20685
AO356_20690: AO356_20690 - SAM-dependent methyltransferase, at 4,615,193 to 4,615,963
_20690
Group
Condition
AO356
_20670
AO356
_20675
AO356
_20680
AO356
_20685
AO356
_20690
stress
Cephalothin 2 mg/ml
-0.2
+0.0
-0.1
-0.6
+0.1
carbon source
Carbon source D-Mannitol 5 mM
-0.4
+0.0
-0.1
+0.2
-0.4
carbon source
Carbon source D-Mannitol 2.5 mM
-0.7
+0.3
-0.0
-0.2
-0.0
stress
1-ethyl-3-methylimidazolium chloride 200 mM
-0.2
+0.2
+0.3
-0.8
-0.1
stress
Sisomicin 0.001 mg/ml
-0.3
-0.2
+0.0
+0.3
-0.3
carbon source
D-Xylose (C)
-0.1
+0.2
+0.1
-0.6
-0.1
lb
LB
+0.0
+0.2
+0.1
-1.0
+0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
-0.2
+0.3
-0.3
-0.1
-0.2
temperature
LB 37C
-0.2
+0.0
+0.1
-0.5
+0.2
resistance
50% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine
+0.1
+0.2
-0.2
-0.3
-0.2
carbon source
D,L-Lactate (C)
+0.0
+0.3
+0.0
-0.6
-0.1
stress
Cobalt chloride 0.08 mM
-0.5
-0.1
+0.3
+0.0
-0.0
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.2
+0.3
-0.3
+0.4
-0.3
survival
4C survival; 1152 hrs
+0.4
-0.2
-0.1
-0.2
-0.1
carbon source
Carbon source Sucrose 2.5 mM
-0.4
+0.3
+0.0
+0.2
-0.1
carbon source
Carbon source Sucrose 5 mM
-0.2
+0.2
+0.3
-0.2
-0.0
survival
4C survival; 360 hrs
+0.5
+0.2
-0.0
-0.8
+0.2
stress
Benzalkonium Chloride 0.016 mg/ml
-0.2
+0.2
+0.3
+0.0
-0.2
carbon source
Carbon source D-Glucose 10 mM
-0.3
+0.1
+0.2
+0.4
-0.0
stress
copper (II) chloride 2.5 mM
-0.2
-0.2
+0.3
+0.4
+0.2
stress
Chlorite 0.04 mM
+0.2
-0.3
+0.1
+0.4
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.3
+0.2
+0.5
+0.2
-0.1
stress
perchlorate 75 mM
-0.2
+0.2
+0.2
+0.3
+0.0
stress
nitrite 10 mM
+0.1
+0.3
+0.1
+0.2
-0.2
carbon source
D-Glucose (C)
+0.4
+0.1
+0.3
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
-0.0
+0.4
+0.2
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.6
-0.3
+0.1
+0.4
+0.0
stress
Rifampicin 0.0024 mg/ml
-0.0
+0.2
-0.1
+0.7
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.6
+0.0
+0.6
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
+0.3
+0.3
-0.0
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