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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_20210 and AO356_20215 are separated by 156 nucleotides
AO356_20215 and AO356_20220 are separated by 185 nucleotides
AO356_20220 and AO356_20225 are separated by 15 nucleotides
AO356_20225 and AO356_20230 are separated by 292 nucleotides
AO356_20210: AO356_20210 - TetR family transcriptional regulator, at 4,519,224 to 4,519,862
_20210
AO356_20215: AO356_20215 - radical SAM protein, at 4,520,019 to 4,520,987
_20215
AO356_20220: AO356_20220 - hypothetical protein, at 4,521,173 to 4,521,778
_20220
AO356_20225: AO356_20225 - proteophosphoglycan precursor, at 4,521,794 to 4,522,354
_20225
AO356_20230: AO356_20230 - GntR family transcriptional regulator, at 4,522,647 to 4,523,393
_20230
Group
Condition
AO356
_20210
AO356
_20215
AO356
_20220
AO356
_20225
AO356
_20230
carbon source
L-Histidine (C)
-0.2
-3.8
+0.0
-0.1
-0.2
stress
Chlorite 0.08 mM
-0.3
-2.6
-0.3
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
-1.1
-1.9
-0.2
+0.0
anaerobic
Nitrate reduction with yeast extract
-0.8
-1.3
-1.3
+0.2
+0.4
carbon source
L-Histidine (C)
-0.1
-3.0
+0.2
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.0
-1.5
-0.5
-0.4
motility
outer cut, LB soft agar motility assay
+0.3
-0.8
-2.1
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.3
-0.7
-1.3
-0.1
-0.3
stress
Chlorite 0.04 mM
+0.4
-2.1
-0.1
-0.4
+0.3
carbon source
Carbon source D-Mannitol 2.5 mM
-0.6
-1.2
-0.0
+0.1
-0.1
carbon source
Carbon source Sucrose 10 mM
-0.4
-1.2
+0.3
-0.3
-0.2
survival
4C survival; 1152 hrs
-0.2
+0.1
-1.2
-0.1
-0.4
stress
Sisomicin 0.001 mg/ml
-1.5
-0.4
+0.0
+0.0
+0.1
carbon source
Carbon source Sucrose 2.5 mM
-0.1
-1.6
+0.2
-0.1
-0.2
carbon source
Carbon source Sucrose 10 mM
-0.3
-0.9
+0.2
+0.0
-0.5
carbon source
Carbon source Sucrose 2.5 mM
-0.3
-1.4
+0.2
+0.0
+0.2
carbon source
Carbon source D-Mannitol 10 mM
-0.7
-0.7
+0.1
+0.1
-0.2
carbon source
Carbon source D-Mannitol 2.5 mM
-0.4
-1.1
+0.2
+0.1
-0.3
carbon source
Carbon source Sucrose 5 mM
-0.4
-1.0
+0.2
-0.1
+0.1
survival
4C survival; 360 hrs
-0.3
+0.2
-0.7
-0.3
+0.2
stress
Lomefloxacin 0.0005 mM
-0.7
+0.2
+0.5
+0.0
-0.8
nitrogen source
Inosine (N)
+0.8
-1.4
+0.2
-0.2
-0.0
nitrogen source
Carnitine Hydrochloride (N)
-0.2
-0.9
+0.4
-0.0
+0.2
phage
P5ss-5 phage 10-1 dilution SM calcl2
+0.6
-1.1
-0.1
+0.3
+0.0
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
-0.6
+0.3
+0.3
+0.3
+0.5
carbon source
D-Xylose (C)
-0.3
-0.5
+0.8
+0.1
+0.8
stress
Benzalkonium Chloride 0.016 mg/ml
+1.6
+0.7
-0.6
+0.1
-0.3
carbon source
D-Xylose (C)
-0.2
-0.1
+0.6
+0.2
+1.0
carbon source
D-Galactose (C)
-0.1
-0.2
+0.3
+0.2
+2.7
carbon source
D-Galactose (C)
+0.0
-0.1
+0.5
+0.1
+3.1
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