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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_19640 and AO356_19645 are separated by 132 nucleotides
AO356_19645 and AO356_19650 overlap by 8 nucleotides
AO356_19650 and AO356_19655 are separated by 424 nucleotides
AO356_19655 and AO356_19660 are separated by 328 nucleotides
AO356_19640: AO356_19640 - hypothetical protein, at 4,403,355 to 4,404,269
_19640
AO356_19645: AO356_19645 - ABC transporter, at 4,404,402 to 4,405,190
_19645
AO356_19650: AO356_19650 - serine/threonine protein kinase, at 4,405,183 to 4,406,481
_19650
AO356_19655: AO356_19655 - glycine/betaine ABC transporter substrate-binding protein, at 4,406,906 to 4,407,760
_19655
AO356_19660: AO356_19660 - hypothetical protein, at 4,408,089 to 4,408,400
_19660
Group
Condition
AO356
_19640
AO356
_19645
AO356
_19650
AO356
_19655
AO356
_19660
stress
Benzalkonium Chloride 0.016 mg/ml
-0.0
-3.7
-3.3
-0.0
-0.2
stress
Doxycycline hyclate 0.0001 mg/ml
+0.2
-1.7
-1.5
-0.5
-0.3
stress
methylglyoxal 0.016 vol%
-0.0
-1.9
-1.4
-0.1
+0.3
stress
Benzalkonium Chloride 0.008 mg/ml
-0.2
-1.5
-1.5
+0.3
+0.2
stress
Nalidixic 0.004 mg/ml
-0.1
-1.1
-1.0
+0.2
-0.3
survival
4C survival; 1152 hrs
-0.0
-0.7
-0.8
-0.4
-0.3
stress
Lomefloxacin 0.0005 mM
+0.7
-1.4
-1.5
+0.2
-0.2
stress
Rifampicin 0.0024 mg/ml
+0.2
-0.9
-0.8
-0.3
-0.3
stress
perchlorate 75 mM
+0.1
-0.9
-1.1
+0.0
-0.1
stress
Tetracycline 0.0001 mg/ml
+0.1
-0.6
-0.6
-0.5
-0.1
stress
nitrate 200 mM
-0.2
-0.2
-0.3
-0.9
-0.1
motility
outer cut, LB soft agar motility assay
-0.4
-0.4
-0.3
-0.7
+0.2
carbon source
Ethanol (C)
-0.1
-0.2
-0.1
-0.1
-1.0
stress
Rifampicin 0.0016 mg/ml
-0.1
-0.7
-0.7
+0.2
-0.2
motility
outer cut, LB soft agar motility assay
+0.5
-0.8
-0.5
-0.5
+0.1
carbon source
L-Histidine (C)
-0.1
-0.3
-0.4
+0.1
-0.4
stress
Bacitracin 2 mg/ml
-0.1
-0.4
-0.6
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.2
-0.8
-0.5
+0.2
-0.0
stress
copper (II) chloride 2.5 mM
+0.3
-0.4
+0.1
-0.4
-0.3
carbon source
acetate (C)
-0.2
-0.3
-0.5
+0.4
-0.0
pH
Minimal media pH9
-0.0
+0.4
+0.2
-0.5
-0.5
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
-0.3
+0.4
-0.3
stress
nitrite 10 mM
+0.5
-0.3
-0.0
+0.1
-0.5
carbon source
L-Lysine (C)
+0.1
+0.6
+0.4
+0.2
-0.9
carbon source
L-Lysine (C)
-0.1
+0.4
+0.4
+0.3
-0.4
stress
Sisomicin 0.001 mg/ml
+0.0
+0.7
+0.6
+0.3
-0.2
carbon source
D-Lactate (C)
-0.0
+0.2
+0.2
+0.3
+0.9
carbon source
D-Lactate (C)
+0.2
+0.1
+0.3
+0.1
+1.1
stress
Choline chloride 500 mM
-0.0
+0.9
+0.8
+0.0
+0.1
anaerobic
Nitrate reduction with yeast extract
+0.3
+1.2
+0.9
-0.2
+0.2
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