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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_19340 and AO356_19345 are separated by 319 nucleotides
AO356_19345 and AO356_19350 overlap by 1 nucleotides
AO356_19350 and AO356_19355 are separated by 124 nucleotides
AO356_19355 and AO356_19360 are separated by 34 nucleotides
AO356_19340: AO356_19340 - NAD(P)H-quinone oxidoreductase, at 4,343,002 to 4,343,964
_19340
AO356_19345: AO356_19345 - hypothetical protein, at 4,344,284 to 4,344,919
_19345
AO356_19350: AO356_19350 - hypothetical protein, at 4,344,919 to 4,345,707
_19350
AO356_19355: AO356_19355 - HAD family hydrolase, at 4,345,832 to 4,346,485
_19355
AO356_19360: AO356_19360 - spermidine/putrescine ABC transporter ATP-binding protein, at 4,346,520 to 4,347,509
_19360
Group
Condition
AO356
_19340
AO356
_19345
AO356
_19350
AO356
_19355
AO356
_19360
stress
methylglyoxal 0.016 vol%
-0.6
-0.2
-0.4
-0.0
-0.3
carbon source
D-Glucosamine Hydrochloride (C)
-0.4
-0.1
-0.3
-0.4
+0.1
carbon source
acetate (C)
-0.1
-0.0
+0.1
-0.2
-0.9
stress
Choline chloride 500 mM
-0.2
-0.2
-0.5
-0.1
+0.1
stress
nitrite 10 mM
-0.8
-0.4
+0.2
+0.1
+0.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.4
+0.2
-0.4
-0.3
-0.1
carbon source
L-Malic (C)
-0.4
-0.2
+0.4
-0.2
-0.0
pH
Minimal media pH7
-0.5
+0.2
+0.2
-0.2
-0.2
carbon source
Tween 20 (C)
-0.7
+0.4
-0.0
-0.1
+0.1
survival
4C survival; 360 hrs
-0.8
+0.3
+0.4
-0.1
-0.1
carbon source
Glycerol (C)
-0.3
+0.1
+0.3
-0.4
-0.1
stress
perchlorate 75 mM
-0.3
+0.3
+0.2
-0.2
-0.3
stress
Choline chloride 300 mM
-0.1
+0.5
-0.4
-0.1
-0.1
phage
P5ss-5 phage 10-1 dilution SM calcl2
-0.0
-0.6
-0.3
+0.5
+0.3
carbon source
L-Histidine (C)
-0.4
-0.2
+0.1
+0.3
+0.1
survival
4C survival; 672 hrs
+0.4
-0.3
+0.1
+0.1
-0.1
stress
Cisplatin 0.0032 mg/ml
+0.2
-0.2
-0.1
+0.5
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.5
-0.5
+0.1
+0.1
+0.0
carbon source
L-Lysine (C)
-0.1
+0.7
+0.1
-0.4
+0.0
stress
Cobalt chloride 0.08 mM
+0.2
-0.4
+0.7
-0.2
+0.0
carbon source
Cytidine (C)
+0.4
-0.3
+0.3
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.2
-0.1
-0.1
+0.2
stress
Sisomicin 0.001 mg/ml
+1.0
-0.0
-0.1
-0.4
+0.2
stress
Chlorite 0.08 mM
+0.4
-0.0
+0.4
-0.2
+0.2
motility
outer cut, LB soft agar motility assay
+0.7
+0.2
+0.2
-0.1
-0.0
stress
Lomefloxacin 0.0005 mM
+0.5
-0.2
+0.1
+0.3
+0.4
carbon source
Carbon source Sucrose 2.5 mM
+0.2
+0.4
+0.3
+0.2
+0.1
stress
KB-half, Pseudo11 supernatant, 100 uM FeCl3
+0.5
+0.2
+0.2
+0.2
+0.2
motility
outer cut, LB soft agar motility assay
+0.4
+0.1
+0.5
+0.3
+0.2
stress
KB-half, Pseudo5 supernatant
+1.5
+0.5
+0.0
+0.3
-0.1
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