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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2C3
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500 nt
AO356_18985 and AO356_18990 are separated by 115 nucleotides
AO356_18990 and AO356_18995 are separated by 148 nucleotides
AO356_18995 and AO356_19000 are separated by 393 nucleotides
AO356_19000 and AO356_19005 are separated by 81 nucleotides
AO356_18985: AO356_18985 - carnitine dehydratase, at 4,269,040 to 4,270,221
_18985
AO356_18990: AO356_18990 - Zn-dependent metalloprotease, at 4,270,337 to 4,270,831
_18990
AO356_18995: AO356_18995 - hypothetical protein, at 4,270,980 to 4,271,582
_18995
AO356_19000: AO356_19000 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 4,271,976 to 4,272,800
_19000
AO356_19005: AO356_19005 - 3-methyladenine DNA glycosylase, at 4,272,882 to 4,273,556
_19005
Group
Condition
AO356
_18985
AO356
_18990
AO356
_18995
AO356
_19000
AO356
_19005
stress
Cisplatin 0.0032 mg/ml
-0.1
-0.1
-0.1
-0.9
-0.7
stress
Cisplatin 0.0032 mg/ml
+0.1
+0.1
+0.3
-0.9
-0.7
carbon source
L-Lysine (C)
+0.0
-0.3
-0.6
+0.0
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.0
-0.2
-0.1
-0.5
-0.3
anaerobic
Nitrate reduction with yeast extract
+0.1
-0.7
-0.2
+0.2
-0.2
stress
nitrate 200 mM
-0.3
+0.0
-0.3
+0.1
-0.4
stress
Chlorite 0.08 mM
-0.2
-0.3
+0.0
+0.1
-0.4
stress
methylglyoxal 0.016 vol%
+0.0
-0.1
+0.1
-0.2
-0.5
carbon source
Ethanol (C)
+0.1
-0.3
-0.2
-0.1
-0.3
carbon source
Fumarate (C)
-0.3
+0.1
+0.0
-0.2
-0.2
stress
Nickel (II) chloride 0.625 mM
+0.2
-0.1
-0.0
-0.6
+0.0
carbon source
acetate (C)
+0.2
+0.0
-0.5
+0.1
-0.3
survival
4C survival; 192 hrs
+0.1
+0.1
+0.0
-0.2
-0.5
stress
Cobalt chloride 0.08 mM
+0.0
-0.2
+0.0
-0.4
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
+0.3
-0.2
-0.1
carbon source
D-Trehalose (C)
+0.1
-0.1
-0.4
+0.2
-0.0
carbon source
D-Trehalose (C)
-0.1
+0.0
-0.5
+0.4
-0.0
stress
acetate 40 mM
+0.0
+0.2
+0.1
-0.3
-0.1
stress
copper (II) chloride 2.5 mM
-0.1
+0.0
-0.1
-0.3
+0.5
carbon source
D-Lactate (C)
+0.2
+0.0
+0.2
-0.4
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
+0.1
+0.3
-0.3
+0.3
stress
nitrite 10 mM
+0.1
+0.1
+0.2
+0.3
-0.4
stress
Doxycycline hyclate 0.0001 mg/ml
-0.2
-0.0
+0.1
+0.5
+0.1
carbon source
Uridine (C)
+0.1
-0.2
+0.4
+0.1
+0.1
carbon source
D-Xylose (C)
+0.1
+0.1
+0.6
-0.1
-0.1
carbon source
D-Ribose (C)
+0.2
+0.1
+0.5
+0.1
-0.1
carbon source
D-Ribose (C)
+0.1
+0.2
+0.4
-0.0
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
+0.0
+0.2
-0.2
+0.4
carbon source
L-Histidine (C)
+0.1
+0.1
+0.4
+0.3
-0.0
carbon source
D-Xylose (C)
+0.1
+0.2
+0.6
+0.0
-0.1
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